RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 KCNB1Q14721 858 aa19.97■□□□□ 0.79
HMGA1-201ENST00000311487 FAM26DQ5JW98 314 aa19.97■□□□□ 0.79
HMGA1-201ENST00000311487 BICD1Q96G01 975 aa19.97■□□□□ 0.79
HMGA1-201ENST00000311487 EEF2KMTQ96G04 330 aa19.97■□□□□ 0.79
HMGA1-201ENST00000311487 TARS2Q9BW92 718 aaKnown RBP19.97■□□□□ 0.79
HMGA1-201ENST00000311487 CCDC113Q9H0I3 377 aa19.97■□□□□ 0.79
HMGA1-201ENST00000311487 SEL1LQ9UBV2 794 aa19.97■□□□□ 0.79
HMGA1-201ENST00000311487 PADI3Q9ULW8 664 aa19.97■□□□□ 0.79
HMGA1-201ENST00000311487 MAPK6Q16659 721 aa19.96■□□□□ 0.79
HMGA1-201ENST00000311487 DPCR1Q3MIW9 517 aa19.96■□□□□ 0.79
HMGA1-201ENST00000311487 ZBTB45Q96K62 511 aaPredicted RBP19.96■□□□□ 0.79
HMGA1-201ENST00000311487 RMND1Q9NWS8 449 aa19.96■□□□□ 0.79
HMGA1-201ENST00000311487 ERLIN2O94905 339 aa19.96■□□□□ 0.79
HMGA1-201ENST00000311487 STRN3Q13033 797 aa19.96■□□□□ 0.79
HMGA1-201ENST00000311487 PAK2Q13177 524 aa19.96■□□□□ 0.79
HMGA1-201ENST00000311487 ZNF658Q5TYW1 1059 aaPredicted RBP19.96■□□□□ 0.79
HMGA1-201ENST00000311487 IFIH1Q9BYX4 1025 aaKnown RBP19.96■□□□□ 0.79
HMGA1-201ENST00000311487 PIN4Q9Y237 131 aaKnown RBP19.96■□□□□ 0.79
HMGA1-201ENST00000311487 ANKRD63C9JTQ0 380 aa19.95■□□□□ 0.78
HMGA1-201ENST00000311487 TSPAN1O60635 241 aa19.95■□□□□ 0.78
HMGA1-201ENST00000311487 HARSP12081 509 aaKnown RBP19.95■□□□□ 0.78
HMGA1-201ENST00000311487 GTF2BQ00403 316 aa19.95■□□□□ 0.78
HMGA1-201ENST00000311487 CDC42EP1Q00587 391 aa19.95■□□□□ 0.78
HMGA1-201ENST00000311487 PRPF4BQ13523 1007 aaKnown RBP19.95■□□□□ 0.78
HMGA1-201ENST00000311487 AMHR2Q16671 573 aa19.95■□□□□ 0.78
HMGA1-201ENST00000311487 RBM43Q6ZSC3 357 aaKnown RBP19.95■□□□□ 0.78
HMGA1-201ENST00000311487 SRGAP1Q7Z6B7 1085 aa19.95■□□□□ 0.78
HMGA1-201ENST00000311487 ZBTB33Q86T24 672 aa19.95■□□□□ 0.78
HMGA1-201ENST00000311487 SYCP3Q8IZU3 236 aa19.95■□□□□ 0.78
HMGA1-201ENST00000311487 DBF4BQ8NFT6 615 aa19.95■□□□□ 0.78
HMGA1-201ENST00000311487 VWCEQ96DN2 955 aa19.95■□□□□ 0.78
HMGA1-201ENST00000311487 PPP1R37O75864 691 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 ARF4P18085 180 aaPredicted RBP19.94■□□□□ 0.78
HMGA1-201ENST00000311487 STX17P56962 302 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 RBL2Q08999 1139 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 PSMD2Q13200 908 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 SASS6Q6UVJ0 657 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 TSHZ1Q6ZSZ6 1077 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 EPM2AIP1Q7L775 607 aaPredicted RBP19.94■□□□□ 0.78
HMGA1-201ENST00000311487 STRA6Q9BX79 667 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 C2orf40Q9H1Z8 148 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 FZD8Q9H461 694 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 ANKFY1Q9P2R3 1169 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 PCDHB13Q9Y5F0 798 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 HNRNPDLO14979 420 aaKnown RBP19.94■□□□□ 0.78
HMGA1-201ENST00000311487 MGEA5O60502 916 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 CAND2O75155 1236 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 SFPQP23246 707 aaKnown RBP eCLIP19.94■□□□□ 0.78
HMGA1-201ENST00000311487 HOXA11P31270 313 aaPredicted RBP19.94■□□□□ 0.78
HMGA1-201ENST00000311487 EFNA5P52803 228 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 SEZ6Q53EL9 994 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 MFSD5Q6N075 450 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 MYOCDQ8IZQ8 938 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 NOC3LQ8WTT2 800 aaKnown RBP19.94■□□□□ 0.78
HMGA1-201ENST00000311487 TMX1Q9H3N1 280 aa19.94■□□□□ 0.78
HMGA1-201ENST00000311487 TRIM49BA6NDI0 452 aa19.93■□□□□ 0.78
HMGA1-201ENST00000311487 PPP1R3GB7ZBB8 358 aa19.93■□□□□ 0.78
HMGA1-201ENST00000311487 CLIC2O15247 247 aa19.93■□□□□ 0.78
HMGA1-201ENST00000311487 MATR3P43243 847 aaKnown RBP eCLIP19.93■□□□□ 0.78
HMGA1-201ENST00000311487 PMS1P54277 932 aaKnown RBP19.93■□□□□ 0.78
HMGA1-201ENST00000311487 POU5F1BQ06416 359 aa19.93■□□□□ 0.78
HMGA1-201ENST00000311487 EEF1DP3Q658K8 133 aa19.93■□□□□ 0.78
HMGA1-201ENST00000311487 PHLPP2Q6ZVD8 1323 aa19.93■□□□□ 0.78
HMGA1-201ENST00000311487 ZSWIM2Q8NEG5 633 aa19.93■□□□□ 0.78
HMGA1-201ENST00000311487 NFKBIZQ9BYH8 718 aa19.93■□□□□ 0.78
HMGA1-201ENST00000311487 ZMYM2Q9UBW7 1377 aa19.93■□□□□ 0.78
HMGA1-201ENST00000311487 ACKR2O00590 384 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 EPHB4P54760 987 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 SLC39A4Q6P5W5 647 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 ZNF507Q8TCN5 953 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 ACCSQ96QU6 501 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 TCHPQ9BT92 498 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 EIF2AQ9BY44 585 aaKnown RBP19.92■□□□□ 0.78
HMGA1-201ENST00000311487 HAPLN2Q9GZV7 340 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 PCIF1Q9H4Z3 704 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 TMEM134Q9H6X4 195 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 CTNND2Q9UQB3 1225 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 RPLP2P05387 115 aaKnown RBP19.92■□□□□ 0.78
HMGA1-201ENST00000311487 LIG4P49917 911 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 NLRP12P59046 1061 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 OSTNP61366 133 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 TYRO3Q06418 890 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 CCDC173Q0VFZ6 552 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 C11orf57Q6ZUT1 292 aaPredicted RBP19.92■□□□□ 0.78
HMGA1-201ENST00000311487 OTOP2Q7RTS6 562 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 IFNLR1Q8IU57 520 aaPredicted RBP19.92■□□□□ 0.78
HMGA1-201ENST00000311487 TMEM199Q8N511 208 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 PPP1R9BQ96SB3 815 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 FUCA2Q9BTY2 467 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 ERVK-5Q9HDB9 667 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 PRMT7Q9NVM4 692 aaPredicted RBP19.92■□□□□ 0.78
HMGA1-201ENST00000311487 HES2Q9Y543 173 aa19.92■□□□□ 0.78
HMGA1-201ENST00000311487 GPR182O15218 404 aa19.91■□□□□ 0.78
HMGA1-201ENST00000311487 KNOP1Q1ED39 458 aaKnown RBP19.91■□□□□ 0.78
HMGA1-201ENST00000311487 ATF7IP2Q5U623 682 aa19.91■□□□□ 0.78
HMGA1-201ENST00000311487 C16orf59Q7L2K0 433 aa19.91■□□□□ 0.78
HMGA1-201ENST00000311487 TMCO2Q7Z6W1 182 aaPredicted RBP19.91■□□□□ 0.78
HMGA1-201ENST00000311487 RTN4RL1Q86UN2 441 aaPredicted RBP19.91■□□□□ 0.78
HMGA1-201ENST00000311487 MAP4K3Q8IVH8 894 aa19.91■□□□□ 0.78
HMGA1-201ENST00000311487 RNF214Q8ND24 703 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms