RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 POLR3FQ9H1D9 316 aaPredicted RBP21.71■■□□□ 1.07
LIME1-201ENST00000309546 RSAD1Q9HA92 442 aa21.71■■□□□ 1.07
LIME1-201ENST00000309546 C11orf16Q9NQ32 467 aa21.71■■□□□ 1.07
LIME1-201ENST00000309546 C5orf42Q9H799 3197 aa21.7■■□□□ 1.06
LIME1-201ENST00000309546 DCXO43602 365 aa21.7■■□□□ 1.06
LIME1-201ENST00000309546 TSPAN1O60635 241 aa21.7■■□□□ 1.06
LIME1-201ENST00000309546 PTENP60484 403 aa21.7■■□□□ 1.06
LIME1-201ENST00000309546 TTC38Q5R3I4 469 aa21.7■■□□□ 1.06
LIME1-201ENST00000309546 AGMOQ6ZNB7 445 aa21.7■■□□□ 1.06
LIME1-201ENST00000309546 MAEAQ7L5Y9 396 aa21.7■■□□□ 1.06
LIME1-201ENST00000309546 CPB2Q96IY4 423 aa21.7■■□□□ 1.06
LIME1-201ENST00000309546 TUFT1Q9NNX1 390 aa21.7■■□□□ 1.06
LIME1-201ENST00000309546 DNAJB4Q9UDY4 337 aa21.7■■□□□ 1.06
LIME1-201ENST00000309546 MED24O75448 989 aa21.69■■□□□ 1.06
LIME1-201ENST00000309546 SPATA31C1P0DKV0 1188 aa21.69■■□□□ 1.06
LIME1-201ENST00000309546 GLRA2P23416 452 aa21.69■■□□□ 1.06
LIME1-201ENST00000309546 ARL2P36404 184 aa21.69■■□□□ 1.06
LIME1-201ENST00000309546 RBM25P49756 843 aaKnown RBP21.69■■□□□ 1.06
LIME1-201ENST00000309546 BMS1Q14692 1282 aaKnown RBP21.69■■□□□ 1.06
LIME1-201ENST00000309546 CATSPER3Q86XQ3 398 aa21.69■■□□□ 1.06
LIME1-201ENST00000309546 NOSTRINQ8IVI9 506 aa21.69■■□□□ 1.06
LIME1-201ENST00000309546 ERMNQ8TAM6 284 aa21.69■■□□□ 1.06
LIME1-201ENST00000309546 APOL5Q9BWW9 433 aa21.69■■□□□ 1.06
LIME1-201ENST00000309546 EIF2AQ9BY44 585 aaKnown RBP21.69■■□□□ 1.06
LIME1-201ENST00000309546 GPRC5CQ9NQ84 441 aa21.69■■□□□ 1.06
LIME1-201ENST00000309546 NOL7Q9UMY1 257 aaKnown RBP21.69■■□□□ 1.06
LIME1-201ENST00000309546 CNTNAP2Q9UHC6 1331 aa21.69■■□□□ 1.06
LIME1-201ENST00000309546 C2orf71A6NGG8 1288 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 GPR37L1O60883 481 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 GALTP07902 379 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 ITGA4P13612 1032 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 SLC11A1P49279 550 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 MBTD1Q05BQ5 628 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 NCBP1Q09161 790 aaKnown RBP21.68■■□□□ 1.06
LIME1-201ENST00000309546 ORC2Q13416 577 aaPredicted RBP21.68■■□□□ 1.06
LIME1-201ENST00000309546 NBR1Q14596 966 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 NOTUMQ6P988 496 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 POTEGQ6S5H5 508 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 MRPL10Q7Z7H8 261 aaKnown RBP21.68■■□□□ 1.06
LIME1-201ENST00000309546 ZNF280BQ86YH2 543 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 VPS52Q8N1B4 723 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 BCL7CQ8WUZ0 217 aaPredicted RBP21.68■■□□□ 1.06
LIME1-201ENST00000309546 AUTS2Q8WXX7 1259 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 IGSF21Q96ID5 467 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 FAM193BQ96PV7 902 aaPredicted RBP21.68■■□□□ 1.06
LIME1-201ENST00000309546 APOL6Q9BWW8 343 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 IPPQ9Y573 584 aa21.68■■□□□ 1.06
LIME1-201ENST00000309546 TDRD15B5MCY1 1934 aaKnown RBP21.68■■□□□ 1.06
LIME1-201ENST00000309546 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.67■■□□□ 1.06
LIME1-201ENST00000309546 CARNS1A5YM72 827 aa21.67■■□□□ 1.06
LIME1-201ENST00000309546 LRRIQ4A6NIV6 560 aa21.67■■□□□ 1.06
LIME1-201ENST00000309546 B4GALT3O60512 393 aa21.67■■□□□ 1.06
LIME1-201ENST00000309546 POMCP01189 267 aa21.67■■□□□ 1.06
LIME1-201ENST00000309546 XRCC6P12956 609 aaKnown RBP eCLIP21.67■■□□□ 1.06
LIME1-201ENST00000309546 NCLP19338 710 aaKnown RBP21.67■■□□□ 1.06
LIME1-201ENST00000309546 AXLP30530 894 aa21.67■■□□□ 1.06
LIME1-201ENST00000309546 AFF1P51825 1210 aaKnown RBP21.67■■□□□ 1.06
LIME1-201ENST00000309546 PCBP1Q15365 356 aaKnown RBP eCLIP21.67■■□□□ 1.061e-6■■■□□ 17.8
LIME1-201ENST00000309546 ANKRD54Q6NXT1 300 aa21.67■■□□□ 1.06
LIME1-201ENST00000309546 IFNLR1Q8IU57 520 aaPredicted RBP21.67■■□□□ 1.06
LIME1-201ENST00000309546 MRPL43Q8N983 215 aaKnown RBP21.67■■□□□ 1.06
LIME1-201ENST00000309546 TMEM87AQ8NBN3 555 aa21.67■■□□□ 1.06
LIME1-201ENST00000309546 SMG8Q8ND04 991 aaKnown RBP21.67■■□□□ 1.06
LIME1-201ENST00000309546 CNNM3Q8NE01 707 aa21.67■■□□□ 1.06
LIME1-201ENST00000309546 ZBP1Q9H171 429 aa21.67■■□□□ 1.06
LIME1-201ENST00000309546 DDHD2O94830 711 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 CXCL14O95715 111 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 ARF4P18085 180 aaPredicted RBP21.66■■□□□ 1.06
LIME1-201ENST00000309546 POU5F1BQ06416 359 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 KCNC3Q14003 757 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 RABEP1Q15276 862 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 DDX53Q86TM3 631 aaKnown RBP21.66■■□□□ 1.06
LIME1-201ENST00000309546 RNF135Q8IUD6 432 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 CASP10Q92851 521 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 CCDC51Q96ER9 411 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 NACC1Q96RE7 527 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 POLR3CQ9BUI4 534 aaPredicted RBP21.66■■□□□ 1.06
LIME1-201ENST00000309546 TRIM6Q9C030 488 aaPredicted RBP21.66■■□□□ 1.06
LIME1-201ENST00000309546 MUTYHQ9UIF7 546 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 DBR1Q9UK59 544 aaKnown RBP21.66■■□□□ 1.06
LIME1-201ENST00000309546 HES2Q9Y543 173 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 HCFC2Q9Y5Z7 792 aa21.66■■□□□ 1.06
LIME1-201ENST00000309546 B4GALT5O43286 388 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 CLASP2O75122 1294 aaKnown RBP21.65■■□□□ 1.06
LIME1-201ENST00000309546 MLH1P40692 756 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 TRAPPC10P48553 1259 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 AMHR2Q16671 573 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 HAUS3Q68CZ6 603 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 TMEM184AQ6ZMB5 413 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 CDR2LQ86X02 465 aaPredicted RBP21.65■■□□□ 1.06
LIME1-201ENST00000309546 MCPH1Q8NEM0 835 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 RPGRIP1Q96KN7 1286 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 PHF7Q9BWX1 381 aaPredicted RBP21.65■■□□□ 1.06
LIME1-201ENST00000309546 CSRNP2Q9H175 543 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 KANSL3Q9P2N6 904 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 HCN4Q9Y3Q4 1203 aa21.65■■□□□ 1.06
LIME1-201ENST00000309546 ARHGEF35A5YM69 484 aa21.64■■□□□ 1.05
LIME1-201ENST00000309546 ST18O60284 1047 aa21.64■■□□□ 1.05
LIME1-201ENST00000309546 SSBP05455 408 aaKnown RBP eCLIP21.64■■□□□ 1.05
LIME1-201ENST00000309546 CTSAP10619 480 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms