RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 MAB21L3Q8N8X9 362 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 TAAR1Q96RJ0 339 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 FBXL5Q9UKA1 691 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 KIAA1024Q9UPX6 916 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 UTP11Q9Y3A2 253 aaKnown RBP11.74□□□□□ -0.53
LSM3-201ENST00000306024 FER1L6Q2WGJ9 1857 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 H0Y3Z8 333 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 TRAPPC3O43617 180 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 SLC37A4O43826 429 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 DNAJC8O75937 253 aaPredicted RBP11.74□□□□□ -0.53
LSM3-201ENST00000306024 CYP2C8P10632 490 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 ITGB3BPQ13352 177 aaPredicted RBP11.74□□□□□ -0.53
LSM3-201ENST00000306024 TRPM8Q7Z2W7 1104 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 PROCA1Q8NCQ7 364 aaPredicted RBP11.74□□□□□ -0.53
LSM3-201ENST00000306024 XPO6Q96QU8 1125 aaKnown RBP11.74□□□□□ -0.53
LSM3-201ENST00000306024 NT5C3AQ9H0P0 336 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 TMBIM4Q9HC24 238 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 MYH8P13535 1937 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 IGF2BP3O00425 579 aaKnown RBP eCLIP11.74□□□□□ -0.53
LSM3-201ENST00000306024 ADAMTS3O15072 1205 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 CREB3O43889 395 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 RTN2O75298 545 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 PRCPP42785 496 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 ORC2Q13416 577 aaPredicted RBP11.74□□□□□ -0.53
LSM3-201ENST00000306024 MTMR1Q13613 665 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 SETDB1Q15047 1291 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 DAAM2Q86T65 1068 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 RETREG2Q8NC44 543 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 CASKIN2Q8WXE0 1202 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 AGTPBP1Q9UPW5 1226 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 RCCD1A6NED2 376 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 SPDYE16A6NNV3 312 aaPredicted RBP11.73□□□□□ -0.53
LSM3-201ENST00000306024 MEIS2O14770 477 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 PLA2G6O60733 806 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 PLCG1P19174 1290 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 PBX1P40424 430 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 FKBP1BP68106 108 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 NPY5RQ15761 445 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 TKFCQ3LXA3 575 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 DENND2CQ68D51 928 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 LONP2Q86WA8 852 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 CNOT6LQ96LI5 555 aaKnown RBP11.73□□□□□ -0.53
LSM3-201ENST00000306024 WDR11Q9BZH6 1224 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 STMN4Q9H169 189 aaPredicted RBP11.73□□□□□ -0.53
LSM3-201ENST00000306024 CORO1CQ9ULV4 474 aaPredicted RBP11.73□□□□□ -0.53
LSM3-201ENST00000306024 PACSIN2Q9UNF0 486 aaPredicted RBP11.73□□□□□ -0.53
LSM3-201ENST00000306024 PDHXO00330 501 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 KRIT1O00522 736 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 NOP56O00567 594 aaKnown RBP11.73□□□□□ -0.53
LSM3-201ENST00000306024 WNT7AO00755 349 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 AHCYL1O43865 530 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 FCER1AP12319 257 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 HSD17B3P37058 310 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 NT5DC1Q5TFE4 455 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 MIS18BP1Q6P0N0 1132 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 CCDC25Q86WR0 208 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 MFN1Q8IWA4 741 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 ELOA2Q8IYF1 753 aaPredicted RBP11.73□□□□□ -0.53
LSM3-201ENST00000306024 IQCKQ8N0W5 287 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 ANKRD42Q8N9B4 389 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 FAM20AQ96MK3 541 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 RAB3IPQ96QF0 476 aaPredicted RBP11.73□□□□□ -0.53
LSM3-201ENST00000306024 MED15Q96RN5 788 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 PARK7Q99497 189 aaKnown RBP11.73□□□□□ -0.53
LSM3-201ENST00000306024 MMP19Q99542 508 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 SPATC1LQ9H0A9 340 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 SCOCQ9UIL1 159 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 KDM3AQ9Y4C1 1321 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 MEIS1O00470 390 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 NR3C2P08235 984 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 GHRP10912 638 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 RAD23BP54727 409 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 KIAA0753Q2KHM9 967 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 SLC9C1Q4G0N8 1177 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 DDX42Q86XP3 938 aaKnown RBP eCLIP11.73□□□□□ -0.53
LSM3-201ENST00000306024 CHST13Q8NET6 341 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 SYTL5Q8TDW5 730 aaPredicted RBP11.73□□□□□ -0.53
LSM3-201ENST00000306024 SHISA4Q96DD7 197 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 AP1M1Q9BXS5 423 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 RGL1Q9NZL6 768 aa11.73□□□□□ -0.53
LSM3-201ENST00000306024 TTC36A6NLP5 189 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 IPO5O00410 1097 aaKnown RBP11.72□□□□□ -0.53
LSM3-201ENST00000306024 MGRN1O60291 552 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 PEX10O60683 326 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 SREBF1P36956 1147 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 STXBP2Q15833 593 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 CRELD2Q6UXH1 353 aaPredicted RBP11.72□□□□□ -0.53
LSM3-201ENST00000306024 PRCCQ92733 491 aaPredicted RBP11.72□□□□□ -0.53
LSM3-201ENST00000306024 TNFRSF25Q93038 417 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 MTMR8Q96EF0 704 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 NAF1Q96HR8 494 aaKnown RBP11.72□□□□□ -0.53
LSM3-201ENST00000306024 ZCWPW1Q9H0M4 648 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 PLCB1Q9NQ66 1216 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 DISC1Q9NRI5 854 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 PANK4Q9NVE7 773 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 PGAP2Q9UHJ9 254 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 FAM237AA0A1B0GTK4 181 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 A0A1W2PQC6 194 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 PFDN1O60925 122 aa11.72□□□□□ -0.53
LSM3-201ENST00000306024 FGFR1OPO95684 399 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms