RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 CHRNDQ07001 517 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 MKRN3Q13064 507 aaKnown RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 YAF2Q8IY57 180 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 ZNF713Q8N859 430 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 AGR3Q8TD06 166 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 KANSL2Q9H9L4 492 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 LGR6Q9HBX8 967 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 BFARQ9NZS9 450 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 MPP6Q9NZW5 540 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 MAN1B1Q9UKM7 699 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 PRDM15P57071 1507 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 DENND3A2RUS2 1198 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 CCDC22O60826 627 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 NPM3O75607 178 aaKnown RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 SDC4P31431 198 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 SYDE2Q5VT97 1194 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 NUDT18Q6ZVK8 323 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 FGD2Q7Z6J4 655 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 GRAMD1CQ8IYS0 662 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 ZNF513Q8N8E2 541 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 NDST4Q9H3R1 872 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 ZSWIM6Q9HCJ5 1215 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 HNRNPRO43390 633 aaKnown RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 MOCS2O96007 188 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 GUCY1A3Q02108 690 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 SMAD1Q15797 465 aaKnown RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 DPCR1Q3MIW9 517 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 SYTL3Q4VX76 610 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 URGCPQ8TCY9 931 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.01□□□□□ -0.655e-7■■■■■ 48.1
CLIP1-201ENST00000302528 AGBL1Q96MI9 1066 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 TRIM62Q9BVG3 475 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 ADAMTS1Q9UHI8 967 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 KDM5DQ9BY66 1539 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 MIF4GDA9UHW6 222 aaKnown RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 TBC1D4O60343 1298 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 GNAT1P11488 350 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 TYK2P29597 1187 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 TNFAIP2Q03169 654 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 SCRN1Q12765 414 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 GTF2H3Q13889 308 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 PASD1Q8IV76 773 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 PPP1R14AQ96A00 147 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 TGS1Q96RS0 853 aaKnown RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 FAM129AQ9BZQ8 928 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 LSG1Q9H089 658 aaKnown RBP11.01□□□□□ -0.65
CLIP1-201ENST00000302528 ECT2Q9H8V3 914 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 ETNK1Q9HBU6 452 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 UBE4BO95155 1302 aa11.01□□□□□ -0.65
CLIP1-201ENST00000302528 CALB1P05937 261 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 PEX3P56589 373 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 KRT17Q04695 432 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 SPDYAQ5MJ70 313 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 RABGAP1LQ5R372 815 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 RC3H1Q5TC82 1133 aaKnown RBP11□□□□□ -0.65
CLIP1-201ENST00000302528 CENPPQ6IPU0 288 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 CLEC4FQ8N1N0 589 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 ARL8AQ96BM9 186 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 UHRF1BP1LA0JNW5 1464 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 LRRC53A6NM62 1247 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 APOA4P06727 396 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 CTTNQ14247 550 aaKnown RBP11□□□□□ -0.65
CLIP1-201ENST00000302528 ZNF699Q32M78 642 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 TWF2Q6IBS0 349 aaKnown RBP11□□□□□ -0.65
CLIP1-201ENST00000302528 NUP93Q8N1F7 819 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 EFHBQ8N7U6 833 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 COA7Q96BR5 231 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 MKL2Q9ULH7 1088 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 ZNF804BA4D1E1 1349 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 HIST1H2AGP0C0S8 130 aaPredicted RBP11□□□□□ -0.65
CLIP1-201ENST00000302528 HIST1H2ADP20671 130 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 CLCN6P51797 869 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 MRPS25P82663 173 aaKnown RBP11□□□□□ -0.65
CLIP1-201ENST00000302528 ZNF235Q14590 738 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 EFHC2Q5JST6 749 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 HIST1H2AHQ96KK5 128 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 CNBD2Q96M20 576 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 HIST1H2AJQ99878 128 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 H2AFJQ9BTM1 129 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 SMARCAD1Q9H4L7 1026 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 SOX13Q9UN79 622 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 DOLKQ9UPQ8 538 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 PYGMP11217 842 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 MAGEA9P43362 315 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 SLC27A3Q5K4L6 730 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 C6orf10Q5SRN2 563 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 PPP4R3CPQ6ZMV5 832 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 CEP95Q96GE4 821 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 ANTXR1Q9H6X2 564 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 BLOC1S6Q9UL45 172 aa11□□□□□ -0.65
CLIP1-201ENST00000302528 EIF2AK2P19525 551 aaKnown RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 HIC1Q14526 733 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 DIS3LQ8TF46 1054 aaKnown RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 SCFD1Q8WVM8 642 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 TSC22D4Q9Y3Q8 395 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 TRPM2O94759 1503 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 FKBP9O95302 570 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 MAGOHP61326 146 aaKnown RBP10.99□□□□□ -0.65
CLIP1-201ENST00000302528 NME3Q13232 169 aa10.99□□□□□ -0.65
CLIP1-201ENST00000302528 CNGA3Q16281 694 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms