RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 QARSP47897 775 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 NONOQ15233 471 aaKnown RBP eCLIP16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 PCBP1Q15365 356 aaKnown RBP eCLIP16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 LONRF3Q496Y0 759 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 AGMOQ6ZNB7 445 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 ANO5Q75V66 913 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 ASCL5Q7RTU5 278 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 BLIDQ8IZY5 108 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 CNNM3Q8NE01 707 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 FLCNQ8NFG4 579 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 BCL7CQ8WUZ0 217 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 PSPC1Q8WXF1 523 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 NKD2Q969F2 451 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 GJA10Q969M2 543 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 FAM20AQ96MK3 541 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 KLHL5Q96PQ7 755 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 RHOBTB2Q9BYZ6 727 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 IFT122Q9HBG6 1241 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 FBXL21Q9UKT6 434 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 DUSP12Q9UNI6 340 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 FAN1Q9Y2M0 1017 aa16.54■□□□□ 0.24
CCDC88B-201ENST00000301897 TMEM150BA6NC51 233 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 MEIS3P2A8K0S8 358 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 CPLX1O14810 134 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 ASAP2O43150 1006 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 DEXIO95424 95 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 TDP2O95551 362 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 URODP06132 367 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 ADH1AP07327 375 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 CNPP09543 421 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 AOC1P19801 751 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 RFC5P40937 340 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 CCT2P78371 535 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 PPP2R5CQ13362 524 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 LETM2Q2VYF4 491 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 KANK3Q6NY19 840 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 CPLX2Q6PUV4 134 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 KRT25Q7Z3Z0 450 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 SKAP1Q86WV1 359 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 ZNF280BQ86YH2 543 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 STAMQ92783 540 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 SH2D3AQ9BRG2 576 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 VN1R3Q9BXE9 311 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 SMOC2Q9H3U7 446 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 KCNK12Q9HB15 430 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 DDX25Q9UHL0 483 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 C2orf16Q68DN1 1984 aa16.53■□□□□ 0.24
CCDC88B-201ENST00000301897 LILRB3O75022 631 aa16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 REC8O95072 547 aa16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 C1RP00736 705 aa16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 SOD2P04179 222 aa16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 P4HBP07237 508 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 KSR1Q8IVT5 923 aa16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 TCP11Q8WWU5 503 aa16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 NXPE3Q969Y0 559 aa16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 CEP170P1Q96L14 293 aa16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 DHX33Q9H6R0 707 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 NCOA5Q9HCD5 579 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-201ENST00000301897 CACNA1AO00555 2505 aa16.52■□□□□ 0.23
CCDC88B-201ENST00000301897 M0R2N6 131 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 NR1I2O75469 434 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 DDHD2O94830 711 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 SSBP05455 408 aaKnown RBP eCLIP16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 GCFC2P16383 781 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 NCLP19338 710 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 AXLP30530 894 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 NCBP1Q09161 790 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 LAMTOR4Q0VGL1 99 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 PLA2G4FQ68DD2 849 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 CWF19L1Q69YN2 538 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 OTUD6AQ7L8S5 288 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 FRMD5Q7Z6J6 570 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 CCDC105Q8IYK2 499 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 HDAC7Q8WUI4 952 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 PRPF31Q8WWY3 499 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 CCDC51Q96ER9 411 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 RPS6KC1Q96S38 1066 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 NAP1L4Q99733 375 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 HERC2P3Q9BVR0 1158 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 SLKQ9H2G2 1235 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 MAN1C1Q9NR34 630 aa16.51■□□□□ 0.23
CCDC88B-201ENST00000301897 NRP1O14786 923 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 INPPL1O15357 1258 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 B4GALT3O60512 393 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 ERLIN2O94905 339 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 GLUD1P00367 558 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 SRGAP2CP0DJJ0 459 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 ITGA4P13612 1032 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 HOXA11P31270 313 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 AK2P54819 239 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 NPEPPSP55786 919 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 ERMP1Q7Z2K6 904 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 SIX5Q8N196 739 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 ZNF274Q96GC6 653 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 SEMA4AQ9H3S1 761 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 WDR6Q9NNW5 1121 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 WNT16Q9UBV4 365 aa16.5■□□□□ 0.23
CCDC88B-201ENST00000301897 CCDC194A0A1B0GVG4 234 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 TBX3O15119 743 aa16.49■□□□□ 0.23
CCDC88B-201ENST00000301897 NPR3P17342 541 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms