RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 RNF146Q9NTX7 359 aa19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 WDR64B1ANS9 1081 aa19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 LYPLA2O95372 231 aa19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 MAPTP10636 758 aaKnown RBP19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 ADSSP30520 456 aa19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 CETN1Q12798 172 aa19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 PRPF4BQ13523 1007 aaKnown RBP19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 EPC2Q52LR7 807 aa19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 TTC19Q6DKK2 380 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 ANO5Q75V66 913 aa19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 TMEM117Q9H0C3 514 aa19.87■□□□□ 0.77
SHKBP1-201ENST00000291842 PPATQ06203 517 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 NNTQ13423 1086 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 ALCAMQ13740 583 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 CFAP58Q5T655 872 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 SH2D3CQ8N5H7 860 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 NR2E1Q9Y466 385 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 NCANO14594 1321 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 OPA1O60313 960 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 FGGP02679 453 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 GMPSP49915 693 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 ZNF211Q13398 564 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 DALRD3Q5D0E6 543 aaKnown RBP19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 DCAF12L1Q5VU92 463 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 RPUSD2Q8IZ73 545 aaKnown RBP19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 PIK3R5Q8WYR1 880 aa19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 CELF4Q9BZC1 486 aaKnown RBP19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 TAF1DQ9H5J8 278 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-201ENST00000291842 GOLGA8KD6RF30 607 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 NFKBIEO00221 500 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 SGPL1O95470 568 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 FTLP02792 175 aaPredicted RBP19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 COPB2P35606 906 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 NPTX2P47972 431 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 MXI1P50539 228 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 NCKAP1LP55160 1127 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 ZNF280AP59817 542 aaPredicted RBP19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 RASGEF1CQ8N431 466 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 BSNDQ8WZ55 320 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 TBX20Q9UMR3 447 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 ATP8B3O60423 1300 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 ANKRD62A6NC57 917 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 ZNF233A6NK53 670 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 TMEM110-MUSTN1A8MSY1 372 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 DDX3YO15523 660 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 JAK3P52333 1124 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 SNRNP35Q16560 246 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 SNRNP48Q6IEG0 339 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 IQCKQ8N0W5 287 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 PPM1KQ8N3J5 372 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 TMEM161BQ8NDZ6 487 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 SEMA4DQ92854 862 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 FAM84AQ96KN4 292 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 NEUROG2Q9H2A3 272 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 RABEP2Q9H5N1 569 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 GABBR1Q9UBS5 961 aa19.85■□□□□ 0.77
SHKBP1-201ENST00000291842 DENND3A2RUS2 1198 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 TTI1O43156 1089 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 NR3C2P08235 984 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 ECHS1P30084 290 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 HMGCS2P54868 508 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 KRT76Q01546 638 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 PPFIA1Q13136 1202 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 NLRX1Q86UT6 975 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 C12orf56Q8IXR9 622 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 CALR3Q96L12 384 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 ISCUQ9H1K1 167 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 TOPORSQ9NS56 1045 aaPredicted RBP19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 MAP3K20Q9NYL2 800 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 TMOD4Q9NZQ9 345 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 CNOT7Q9UIV1 285 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 ATMINO43313 823 aaPredicted RBP19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 CNGA1P29973 690 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 BACE1P56817 501 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 AADACL2Q6P093 401 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 CEP170P1Q96L14 293 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 CTTNBP2NLQ9P2B4 639 aa19.84■□□□□ 0.77
SHKBP1-201ENST00000291842 CYP26A1O43174 497 aa19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 ZNF862O60290 1169 aa19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 SFNP31947 248 aa19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 DMP1Q13316 513 aaPredicted RBP19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 VSIG10LQ86VR7 867 aa19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 WHAMMQ8TF30 809 aa19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 KREMEN1Q96MU8 473 aa19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 WRNIP1Q96S55 665 aa19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 PCDHB18PQ96TA0 734 aa19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 MOV10L1Q9BXT6 1211 aaKnown RBP19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 PCDHA10Q9Y5I2 948 aa19.83■□□□□ 0.77
SHKBP1-201ENST00000291842 DAPK3O43293 454 aa19.83■□□□□ 0.76
SHKBP1-201ENST00000291842 RFX1P22670 979 aa19.83■□□□□ 0.76
SHKBP1-201ENST00000291842 SMTNP53814 917 aa19.83■□□□□ 0.76
SHKBP1-201ENST00000291842 NOP9Q86U38 636 aaKnown RBP19.83■□□□□ 0.76
SHKBP1-201ENST00000291842 SLC47A2Q86VL8 602 aa19.83■□□□□ 0.76
SHKBP1-201ENST00000291842 ALG3Q92685 438 aa19.83■□□□□ 0.76
SHKBP1-201ENST00000291842 ST6GALNAC4Q9H4F1 302 aa19.83■□□□□ 0.76
SHKBP1-201ENST00000291842 KMT5AQ9NQR1 393 aa19.83■□□□□ 0.76
SHKBP1-201ENST00000291842 CWC15Q9P013 229 aaKnown RBP19.83■□□□□ 0.76
SHKBP1-201ENST00000291842 LCMT1Q9UIC8 334 aa19.83■□□□□ 0.76
SHKBP1-201ENST00000291842 FLT3P36888 993 aa19.82■□□□□ 0.76
SHKBP1-201ENST00000291842 SF3B2Q13435 895 aaKnown RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms