RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 MLXIPLQ9NP71 852 aa12.38□□□□□ -0.43
CLSTN3-201ENST00000266546 I3L4J1 428 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 BAG2O95816 211 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 PSMC2P35998 433 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 ITIH3Q06033 890 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 BTNL9Q6UXG8 535 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 CFAP61Q8NHU2 1237 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 ACER1Q8TDN7 264 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 XPO6Q96QU8 1125 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 IWS1Q96ST2 819 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 TCHPQ9BT92 498 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 H0Y3Z8 333 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 PLA2G6O60733 806 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 KIF22Q14807 665 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 AGBL2Q5U5Z8 902 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 PAGR1Q9BTK6 254 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 LARSQ9P2J5 1176 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 PNMA3Q9UL41 463 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 DIS3Q9Y2L1 958 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 CCNA1P78396 465 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 MKRN3Q13064 507 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 LRRC14Q15048 493 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 FAM47EQ6ZV65 393 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 HDAC7Q8WUI4 952 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 SREK1Q8WXA9 508 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 PDGFDQ9GZP0 370 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 ECT2Q9H8V3 914 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 ETNK1Q9HBU6 452 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 DNAJC17Q9NVM6 304 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 TTI1O43156 1089 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 DIAPH2O60879 1101 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 KLRC1P26715 233 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 MDM2Q00987 491 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 ZNF211Q13398 564 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 MTMR2Q13614 643 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 TMED2Q15363 201 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 SLC51AQ86UW1 340 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 FNBP1Q96RU3 617 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 GMLQ99445 158 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 ISCUQ9H1K1 167 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 TBC1D22BQ9NU19 505 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 GINS2Q9Y248 185 aa12.37□□□□□ -0.43
CLSTN3-201ENST00000266546 TESPA1A2RU30 521 aaPredicted RBP12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 EIF4E1BA6NMX2 242 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 MAN1A1P33908 653 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 IRX1P78414 480 aaPredicted RBP12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 MYL7Q01449 175 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 MAP7Q14244 749 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 EARS2Q5JPH6 523 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 XRRA1Q6P2D8 792 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 USP38Q8NB14 1042 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 PROCA1Q8NCQ7 364 aaPredicted RBP12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 SLC17A8Q8NDX2 589 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 RILPQ96NA2 401 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 GPRC5DQ9NZD1 345 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 GGT7Q9UJ14 662 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 ANAPC5Q9UJX4 755 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 CCT8L1PA6NM43 557 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 ICAM1P05362 532 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 CHN1P15882 459 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 HSD17B3P37058 310 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 ECE1P42892 770 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 COASYQ13057 564 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 BIRC2Q13490 618 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 CCDC110Q8TBZ0 833 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 RAD54LQ92698 747 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 RNF146Q9NTX7 359 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 DONSONQ9NYP3 566 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 EXOC7Q9UPT5 735 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 PCDHAC2Q9Y5I4 1007 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 SYNGAP1Q96PV0 1343 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 MAPK13O15264 365 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 OPHN1O60890 802 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 TAF1P21675 1872 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 RHOT2Q8IXI1 618 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 AENQ8WTP8 325 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 UPF1Q92900 1129 aaKnown RBP eCLIP12.36□□□□□ -0.434e-13■■■■■ 51.6
CLSTN3-201ENST00000266546 CAVIN3Q969G5 261 aa12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 RAVER2Q9HCJ3 691 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-201ENST00000266546 COL2A1P02458 1487 aaPredicted RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 PDHA1P08559 390 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 CNGA1P29973 690 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 SH3BGRP55822 239 aaPredicted RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 RNASELQ05823 741 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 CEP55Q53EZ4 464 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 FASTKD5Q7L8L6 764 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 PDCD7Q8N8D1 485 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 MIPOL1Q8TD10 442 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 CASKIN2Q8WXE0 1202 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 ZNF653Q96CK0 615 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 NOD2Q9HC29 1040 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 ZNF148Q9UQR1 794 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 DOCK2Q92608 1830 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 SNED1Q8TER0 1413 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 PRPF6O94906 941 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 CRYMQ14894 314 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 CFAP157Q5JU67 520 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 DCUN1D2Q6PH85 259 aa12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 NSUN6Q8TEA1 469 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-201ENST00000266546 TNFRSF25Q93038 417 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms