RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 CALCRLQ16602 461 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 XKR9Q5GH70 373 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 TWF2Q6IBS0 349 aaKnown RBP10.86□□□□□ -0.67
VPS41-201ENST00000265745 TMEM184AQ6ZMB5 413 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 SRGAP1Q7Z6B7 1085 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 FERMT3Q86UX7 667 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 SLC39A11Q8N1S5 342 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 VN1R2Q8NFZ6 395 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 RSPH1Q8WYR4 309 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 LPPQ93052 612 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 TCF25Q9BQ70 676 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 EIF2AK1Q9BQI3 630 aaKnown RBP10.86□□□□□ -0.67
VPS41-201ENST00000265745 MRPL9Q9BYD2 267 aaKnown RBP10.86□□□□□ -0.67
VPS41-201ENST00000265745 TTC12Q9H892 705 aaPredicted RBP10.86□□□□□ -0.67
VPS41-201ENST00000265745 MINDY3Q9H8M7 445 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 NPDC1Q9NQX5 325 aaPredicted RBP10.86□□□□□ -0.67
VPS41-201ENST00000265745 FAM105AQ9NUU6 356 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 BARX2Q9UMQ3 279 aaPredicted RBP10.86□□□□□ -0.67
VPS41-201ENST00000265745 LIMCH1Q9UPQ0 1083 aa10.86□□□□□ -0.67
VPS41-201ENST00000265745 FSD2A1L4K1 749 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 FAM86C2PA6NEL3 165 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 MEIS3P2A8K0S8 358 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 HIDE1A8MVS5 230 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 DCXO43602 365 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 GAS2O43903 313 aaKnown RBP10.85□□□□□ -0.67
VPS41-201ENST00000265745 OFD1O75665 1012 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 GABBR2O75899 941 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 TXKP42681 527 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 RAB27AP51159 221 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 BCAR1P56945 870 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 TRIM29Q14134 588 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 EMC2Q15006 297 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 LONRF3Q496Y0 759 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 PLPP4Q5VZY2 271 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 TMC7Q7Z402 723 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 MRPL10Q7Z7H8 261 aaKnown RBP10.85□□□□□ -0.67
VPS41-201ENST00000265745 MRPL43Q8N983 215 aaKnown RBP10.85□□□□□ -0.67
VPS41-201ENST00000265745 RNF149Q8NC42 400 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 TCP11Q8WWU5 503 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 POP1Q99575 1024 aaKnown RBP10.85□□□□□ -0.67
VPS41-201ENST00000265745 XPNPEP1Q9NQW7 623 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 AGPAT5Q9NUQ2 364 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 PCDHB2Q9Y5E7 798 aa10.85□□□□□ -0.67
VPS41-201ENST00000265745 NT5C1B-RDH14C9J2C7 533 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 MAP3K7O43318 606 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 NEMFO60524 1076 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 XRCC6P12956 609 aaKnown RBP eCLIP10.84□□□□□ -0.67
VPS41-201ENST00000265745 FOSBP53539 338 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 POU5F1BQ06416 359 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 MXD4Q14582 209 aaPredicted RBP10.84□□□□□ -0.67
VPS41-201ENST00000265745 NOMO2Q5JPE7 1267 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 UBXN11Q5T124 520 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 GLB1LQ6UWU2 654 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 SUSD6Q92537 303 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 PGBD4Q96DM1 585 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 PCMTD1Q96MG8 357 aaPredicted RBP10.84□□□□□ -0.67
VPS41-201ENST00000265745 MTRQ99707 1265 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 EPAS1Q99814 870 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 LLPHQ9BRT6 129 aaKnown RBP10.84□□□□□ -0.67
VPS41-201ENST00000265745 S1PR5Q9H228 398 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 TMEM60Q9H2L4 133 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 ENTPD7Q9NQZ7 604 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 ANKEF1Q9NU02 776 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 TBC1D13Q9NVG8 400 aa10.84□□□□□ -0.67
VPS41-201ENST00000265745 USP15Q9Y4E8 981 aaPredicted RBP10.84□□□□□ -0.67
VPS41-201ENST00000265745 CARNS1A5YM72 827 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 C2orf71A6NGG8 1288 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 PRR33A8MZF0 331 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 ZC3H11AO75152 810 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS41-201ENST00000265745 DGAT1O75907 488 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 GALTP07902 379 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 SPATA31C1P0DKV0 1188 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 ATP2B1P20020 1258 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 MCM7P33993 719 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 ARL2P36404 184 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 RARRES1P49788 294 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 AFF1P51825 1210 aaKnown RBP10.83□□□□□ -0.68
VPS41-201ENST00000265745 PTENP60484 403 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 GUCY1B3Q02153 619 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 PCBP1Q15365 356 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS41-201ENST00000265745 SAFBQ15424 915 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS41-201ENST00000265745 ANKRD54Q6NXT1 300 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 SYCE2Q6PIF2 218 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 AGMOQ6ZNB7 445 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 TMEM173Q86WV6 379 aaPredicted RBP10.83□□□□□ -0.68
VPS41-201ENST00000265745 RNF135Q8IUD6 432 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 CCDC83Q8IWF9 413 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 IGSF21Q96ID5 467 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 DCBLD2Q96PD2 775 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 KIF2CQ99661 725 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 NRDE2Q9H7Z3 1164 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 INPP5FQ9Y2H2 1132 aa10.83□□□□□ -0.68
VPS41-201ENST00000265745 A0A087WWV3 80 aa10.82□□□□□ -0.68
VPS41-201ENST00000265745 POTEMA6NI47 508 aa10.82□□□□□ -0.68
VPS41-201ENST00000265745 LOC730098B7Z3J9 87 aa10.82□□□□□ -0.68
VPS41-201ENST00000265745 B4GALT3O60512 393 aa10.82□□□□□ -0.68
VPS41-201ENST00000265745 CXCL14O95715 111 aa10.82□□□□□ -0.68
VPS41-201ENST00000265745 SRGAP2BP0DMP2 458 aa10.82□□□□□ -0.68
VPS41-201ENST00000265745 HOXB8P17481 243 aaPredicted RBP10.82□□□□□ -0.68
VPS41-201ENST00000265745 TECP42680 631 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms