RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 GTF2IP78347 998 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 SF3B3Q15393 1217 aaKnown RBP9.42□□□□□ -0.9
VAPB-201ENST00000265619 PARP6Q2NL67 630 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 DCAF12L1Q5VU92 463 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 IFNL3Q8IZI9 196 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 C4orf32Q8N8J7 132 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 FAM133AQ8N9E0 248 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 WDR60Q8WVS4 1066 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 TGS1Q96RS0 853 aaKnown RBP9.42□□□□□ -0.9
VAPB-201ENST00000265619 TMEM60Q9H2L4 133 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 TUT1Q9H6E5 874 aaKnown RBP9.42□□□□□ -0.9
VAPB-201ENST00000265619 DBNDD1Q9H9R9 158 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 ARHGEF38Q9NXL2 777 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 ARPP21Q9UBL0 812 aaPredicted RBP9.42□□□□□ -0.9
VAPB-201ENST00000265619 COL4A1P02462 1669 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 VHLP40337 213 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 PDE4DQ08499 809 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 CCDC15Q0P6D6 951 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 GRIK5Q16478 980 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 FAM47AQ5JRC9 791 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 APLFQ8IW19 511 aaPredicted RBP9.42□□□□□ -0.9
VAPB-201ENST00000265619 RAB3IPQ96QF0 476 aaPredicted RBP9.42□□□□□ -0.9
VAPB-201ENST00000265619 KCNK9Q9NPC2 374 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 SLCO1B3Q9NPD5 702 aa9.42□□□□□ -0.9
VAPB-201ENST00000265619 SEC63Q9UGP8 760 aaKnown RBP9.42□□□□□ -0.9
VAPB-201ENST00000265619 CAPN9O14815 690 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 EIF3BP55884 814 aaKnown RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 FUT2Q10981 343 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 ZNF211Q13398 564 aaPredicted RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 GRAPQ13588 217 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 KPNB1Q14974 876 aaKnown RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 DUPD1Q68J44 220 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 MFSD6Q6ZSS7 791 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 PRUNE1Q86TP1 453 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 VSIG1Q86XK7 387 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 SLC15A3Q8IY34 581 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 ZNF654Q8IZM8 581 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 GBP7Q8N8V2 638 aaPredicted RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 GRAPLQ8TC17 118 aaPredicted RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 STRBPQ96SI9 672 aaKnown RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 CORO1BQ9BR76 489 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 FAM114A2Q9NRY5 505 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 STK32BQ9NY57 414 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 GGA1Q9UJY5 639 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 MYH3P11055 1940 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 ATRNO75882 1429 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 RNASEH1O60930 286 aaKnown RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 AGTP01019 485 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 FGGP02679 453 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 GSTA2P09210 222 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 GALK1P51570 392 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 MECOMQ03112 1051 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 LIN52Q52LA3 116 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 EAPPQ56P03 285 aaPredicted RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 GET4Q7L5D6 327 aaPredicted RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 MAPKAPK5Q8IW41 473 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 HIC2Q96JB3 615 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 TRIM7Q9C029 511 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 MCM9Q9NXL9 1143 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 CLIC5Q9NZA1 410 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 GRHL1Q9NZI5 618 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 UTP11Q9Y3A2 253 aaKnown RBP9.41□□□□□ -0.9
VAPB-201ENST00000265619 PFASO15067 1338 aa9.41□□□□□ -0.9
VAPB-201ENST00000265619 O00370 1275 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 CETPP11597 493 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 UBE4AQ14139 1066 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 WTAPQ15007 396 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 ZNF362Q5T0B9 420 aaPredicted RBP9.4□□□□□ -0.9
VAPB-201ENST00000265619 LRRC74BQ6ZQY2 392 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 CKAP2Q8WWK9 683 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 ESR2Q92731 530 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 PRR11Q96HE9 360 aaPredicted RBP9.4□□□□□ -0.9
VAPB-201ENST00000265619 DHTKD1Q96HY7 919 aaPredicted RBP9.4□□□□□ -0.9
VAPB-201ENST00000265619 MPP4Q96JB8 637 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 SRPK1Q96SB4 655 aaKnown RBP9.4□□□□□ -0.9
VAPB-201ENST00000265619 TSPAN18Q96SJ8 248 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 OXCT2Q9BYC2 517 aaPredicted RBP9.4□□□□□ -0.9
VAPB-201ENST00000265619 DNAJC17Q9NVM6 304 aaKnown RBP9.4□□□□□ -0.9
VAPB-201ENST00000265619 FAM205AQ6ZU69 1335 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 AKAP11Q9UKA4 1901 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.4□□□□□ -0.9
VAPB-201ENST00000265619 USP17L12C9JPN9 530 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 USP17L21D6R901 530 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 ZBTB7AO95365 584 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 LDHBP07195 334 aaKnown RBP9.4□□□□□ -0.9
VAPB-201ENST00000265619 HNRNPCP07910 306 aaKnown RBP eCLIP9.4□□□□□ -0.9
VAPB-201ENST00000265619 PYGMP11217 842 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 FOXD4Q12950 439 aaPredicted RBP9.4□□□□□ -0.9
VAPB-201ENST00000265619 PPP2R5CQ13362 524 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 SLC18A3Q16572 532 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 FAM83BQ5T0W9 1011 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 RNF43Q68DV7 783 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 C4orf50Q6ZRC1 276 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 SATL1Q86VE3 508 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 CLMNQ96JQ2 1002 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 IWS1Q96ST2 819 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 ANKRD2Q9GZV1 360 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 CUEDC2Q9H467 287 aa9.4□□□□□ -0.9
VAPB-201ENST00000265619 ATF5Q9Y2D1 282 aaPredicted RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms