RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 PYGMP11217 842 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 SCP2P22307 547 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 HOXA7P31268 230 aaPredicted RBP13.34□□□□□ -0.27
CHMP3-201ENST00000263856 CRKP46108 304 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 NOVP48745 357 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 PRELID2Q8N945 189 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 ATG4AQ8WYN0 398 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 PWWP2AQ96N64 755 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 PAGR1Q9BTK6 254 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 ADAM33Q9BZ11 813 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 ZDHHC18Q9NUE0 388 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 FGFR1OP2Q9NVK5 253 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 CYP26A1O43174 497 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 SLITRK3O94933 977 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 SGPL1O95470 568 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 BCRP11274 1271 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 CDC25CP30307 473 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 SSTR3P32745 418 aaPredicted RBP13.34□□□□□ -0.27
CHMP3-201ENST00000263856 POU5F1Q01860 360 aaKnown RBP13.34□□□□□ -0.27
CHMP3-201ENST00000263856 BFSP1Q12934 665 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 ABCB5Q2M3G0 1257 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 EPC2Q52LR7 807 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 EMC10Q5UCC4 262 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 NUGGCQ68CJ6 796 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 ZDHHC24Q6UX98 284 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 CAPN12Q6ZSI9 719 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 FAM228AQ86W67 206 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 CCT6BQ92526 530 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 ZNF653Q96CK0 615 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 FAM20AQ96MK3 541 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 WDR18Q9BV38 432 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.34□□□□□ -0.27
CHMP3-201ENST00000263856 VAV3Q9UKW4 847 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 MYH11P35749 1972 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 TMEM150BA6NC51 233 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 TCP11X1B4DZS4 312 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 CLDN3O15551 220 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 BMP3P12645 472 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 PPATQ06203 517 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 MYO1EQ12965 1108 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 DRP2Q13474 957 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 DAB2IPQ5VWQ8 1189 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 C1orf131Q8NDD1 294 aaKnown RBP13.34□□□□□ -0.27
CHMP3-201ENST00000263856 TAOK3Q9H2K8 898 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 EPB41L4BQ9H329 900 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 WRAP73Q9P2S5 460 aaPredicted RBP13.34□□□□□ -0.27
CHMP3-201ENST00000263856 RPTORQ8N122 1335 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 SYNGAP1Q96PV0 1343 aa13.34□□□□□ -0.27
CHMP3-201ENST00000263856 HIP1RO75146 1068 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 BBOX1O75936 387 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 GAP43P17677 238 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 VCAM1P19320 739 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 ELF1P32519 619 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 DDR1Q08345 913 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 PLCB4Q15147 1175 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 APOBEC3HQ6NTF7 200 aaKnown RBP13.33□□□□□ -0.28
CHMP3-201ENST00000263856 ZNF622Q969S3 477 aaKnown RBP eCLIP13.33□□□□□ -0.28
CHMP3-201ENST00000263856 TLCD1Q96CP7 247 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 CBWD1Q9BRT8 395 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 GPR88Q9GZN0 384 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 TMX4Q9H1E5 349 aaPredicted RBP13.33□□□□□ -0.28
CHMP3-201ENST00000263856 INTUQ9ULD6 942 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 PLIN4Q96Q06 1357 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 COL5A3P25940 1745 aaPredicted RBP13.33□□□□□ -0.28
CHMP3-201ENST00000263856 CYP3A7-CYP3A51PA0A087WV96 503 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 GSTTP1A0A1W2PQM5 241 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 CYP3A7P24462 503 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 SREBF1P36956 1147 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 ECE1P42892 770 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 CETN1Q12798 172 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 ACCSLQ4AC99 568 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 STXBP4Q6ZWJ1 553 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 CCDC50Q8IVM0 306 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 ZDHHC14Q8IZN3 488 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 EIF1ADQ8N9N8 165 aaKnown RBP13.33□□□□□ -0.28
CHMP3-201ENST00000263856 ZNF577Q9BSK1 485 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 NUP85Q9BW27 656 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 NOD2Q9HC29 1040 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 MTUS1Q9ULD2 1270 aa13.33□□□□□ -0.28
CHMP3-201ENST00000263856 UBOX5O94941 541 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 KRT5P13647 590 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 NPEPPSP55786 919 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 GPC5P78333 572 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 ELF3P78545 371 aaPredicted RBP13.32□□□□□ -0.28
CHMP3-201ENST00000263856 DHX34Q14147 1143 aaKnown RBP13.32□□□□□ -0.28
CHMP3-201ENST00000263856 HP1BP3Q5SSJ5 553 aaPredicted RBP13.32□□□□□ -0.28
CHMP3-201ENST00000263856 RNF207Q6ZRF8 634 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 ZNF720Q7Z2F6 126 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 ARMC9Q7Z3E5 817 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 DCAF4Q8WV16 495 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 PRCCQ92733 491 aaPredicted RBP13.32□□□□□ -0.28
CHMP3-201ENST00000263856 CCDC17Q96LX7 622 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 ZSWIM1Q9BR11 485 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 LXNQ9BS40 222 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 HEMGNQ9BXL5 484 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 NSRP1Q9H0G5 558 aaKnown RBP13.32□□□□□ -0.28
CHMP3-201ENST00000263856 VEZTQ9HBM0 779 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 GRHL1Q9NZI5 618 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 TRPC6Q9Y210 931 aa13.32□□□□□ -0.28
CHMP3-201ENST00000263856 FAM187AA6NFU0 413 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms