RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CYBBP04839 570 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 FKBP3Q00688 224 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 NKX1-1Q15270 411 aaPredicted RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 SH3BP5LQ7L8J4 393 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 HS6ST3Q8IZP7 471 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 IKBKBO14920 756 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 LSG1Q9H089 658 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 POLE3Q9NRF9 147 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 MAP3K20Q9NYL2 800 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 CTIFO43310 598 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 DEAF1O75398 565 aaPredicted RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 TMEM270Q6UE05 265 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 SLC24A3Q9HC58 644 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 ADAM22Q9P0K1 906 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 DARSP14868 501 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 MRPS25P82663 173 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 TSEN34Q9BSV6 310 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 SAMSN1Q9NSI8 373 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 BABAM1Q9NWV8 329 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 HMGXB3Q12766 1538 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 RALBP11234 206 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 DYNC1I2Q13409 638 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 PDAP1Q13442 181 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 TRIM62Q9BVG3 475 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 FHDC1Q9C0D6 1143 aaPredicted RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 TEX28O15482 410 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 IRF1P10914 325 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 ATP5JP18859 108 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 RFX3P48380 749 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 GUCY1A3Q02108 690 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 RBM41Q96IZ5 413 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 PARVBQ9HBI1 364 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 EMILIN3Q9NT22 766 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 MAP3K1Q13233 1512 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 A0A0D9SFI3 127 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 SEMA3EO15041 775 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 ETF1P62495 437 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 CUL3Q13618 768 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 EFHC2Q5JST6 749 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 PIGSQ96S52 555 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 FAM96AQ9H5X1 160 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 MPP6Q9NZW5 540 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 PCSK1NQ9UHG2 260 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 THOC2Q8NI27 1593 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 ASAP2O43150 1006 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 ALDH1A2O94788 518 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 RUNX1T1Q06455 604 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 ITPRIPL1Q6GPH6 555 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 VN1R5Q7Z5H4 357 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 BCL2L14Q9BZR8 327 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 ECT2Q9H8V3 914 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 KDM5AP29375 1690 aaKnown RBP12.04□□□□□ -0.48
PTPN4-201ENST00000263708 YEATS2Q9ULM3 1422 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 ATP5HO75947 161 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 FKBP9O95302 570 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 RAB14P61106 215 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 INPP5AQ14642 412 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 KLHL38Q2WGJ6 581 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 FKBP9P1Q75LS8 142 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 TGS1Q96RS0 853 aaKnown RBP12.04□□□□□ -0.48
PTPN4-201ENST00000263708 ABCC4O15439 1325 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 FGAP02671 866 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 ALDH18A1P54886 795 aaKnown RBP12.04□□□□□ -0.48
PTPN4-201ENST00000263708 TRIM48Q8IWZ4 208 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 LBHD1Q9BQE6 289 aaPredicted RBP12.04□□□□□ -0.48
PTPN4-201ENST00000263708 SOX13Q9UN79 622 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 ATP10DQ9P241 1426 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 MUC3BQ9H195 1237 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 LMBRD1Q9NUN5 540 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 PLCG1P19174 1290 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 SCFD1Q8WVM8 642 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 USP44Q9H0E7 712 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 RRAGDQ9NQL2 400 aaPredicted RBP12.04□□□□□ -0.48
PTPN4-201ENST00000263708 CALB1P05937 261 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 SDE2Q6IQ49 451 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 CDR2LQ86X02 465 aaPredicted RBP12.04□□□□□ -0.48
PTPN4-201ENST00000263708 PIGOQ8TEQ8 1089 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 SAAL1Q96ER3 474 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 SPATA16Q9BXB7 569 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 NSMCE4AQ9NXX6 385 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 SYNGAP1Q96PV0 1343 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 C6orf10Q5SRN2 563 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 TMA16Q96EY4 203 aaKnown RBP12.04□□□□□ -0.48
PTPN4-201ENST00000263708 CCDC17Q96LX7 622 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 PKP3Q9Y446 797 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 TRIM32Q13049 653 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 AHI1Q8N157 1196 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 NUP85Q9BW27 656 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 CARMIL3Q8ND23 1372 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 RASSF9O75901 435 aa12.04□□□□□ -0.48
PTPN4-201ENST00000263708 ZC3H7BQ9UGR2 993 aaKnown RBP12.04□□□□□ -0.48
PTPN4-201ENST00000263708 GRK2P25098 689 aa12.03□□□□□ -0.48
PTPN4-201ENST00000263708 DALRD3Q5D0E6 543 aaKnown RBP12.03□□□□□ -0.48
PTPN4-201ENST00000263708 MAGEB10Q96LZ2 347 aaPredicted RBP12.03□□□□□ -0.48
PTPN4-201ENST00000263708 LDHAP00338 332 aaKnown RBP12.03□□□□□ -0.48
PTPN4-201ENST00000263708 KCNJ6P48051 423 aa12.03□□□□□ -0.48
PTPN4-201ENST00000263708 ST13P50502 369 aaKnown RBP12.03□□□□□ -0.48
PTPN4-201ENST00000263708 ALCAMQ13740 583 aa12.03□□□□□ -0.48
PTPN4-201ENST00000263708 ANKS6Q68DC2 871 aa12.03□□□□□ -0.48
PTPN4-201ENST00000263708 ZBTB38Q8NAP3 1195 aaPredicted RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms