RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 FOXR2Q6PJQ5 311 aa23.01■■□□□ 1.27
TRIM28-201ENST00000253024 SPOPO43791 374 aa23.01■■□□□ 1.27
TRIM28-201ENST00000253024 TUFT1Q9NNX1 390 aa23.01■■□□□ 1.27
TRIM28-201ENST00000253024 CUL1Q13616 776 aa23.01■■□□□ 1.27
TRIM28-201ENST00000253024 ATP8B4Q8TF62 1192 aa23.01■■□□□ 1.27
TRIM28-201ENST00000253024 C1orf54Q8WWF1 131 aa23.01■■□□□ 1.27
TRIM28-201ENST00000253024 ADRB2P07550 413 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 KRT5P13647 590 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 IFI35P80217 286 aaPredicted RBP23■■□□□ 1.27
TRIM28-201ENST00000253024 SLFN11Q7Z7L1 901 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 NOP9Q86U38 636 aaKnown RBP23■■□□□ 1.27
TRIM28-201ENST00000253024 PWWP2AQ96N64 755 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 SEMA4AQ9H3S1 761 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 HSPBP1Q9NZL4 362 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 FRMPD4Q14CM0 1322 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 HMGB1P1B2RPK0 211 aaPredicted RBP23■■□□□ 1.27
TRIM28-201ENST00000253024 PYGMP11217 842 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 PPP2R5CQ13362 524 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 TTC27Q6P3X3 843 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 ARHGAP27Q6ZUM4 889 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 JAMLQ86YT9 394 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 ATG4AQ8WYN0 398 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 SEMA4DQ92854 862 aa23■■□□□ 1.27
TRIM28-201ENST00000253024 ZNF70Q9UC06 446 aaPredicted RBP23■■□□□ 1.27
TRIM28-201ENST00000253024 LY75O60449 1722 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 TMEM253P0C7T8 217 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 SLC29A2Q14542 456 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 XKR9Q5GH70 373 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 HAUS6Q7Z4H7 955 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 TAX1BP1Q86VP1 789 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 CCDC105Q8IYK2 499 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 TMX2Q9Y320 296 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 ZNF831Q5JPB2 1677 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 SF3B2Q13435 895 aaKnown RBP22.99■■□□□ 1.27
TRIM28-201ENST00000253024 FAM182AQ5T1J6 154 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 PRAMEF18Q5VWM3 479 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 PRUNE1Q86TP1 453 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 LARGE2Q8N3Y3 721 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 CYFIP2Q96F07 1278 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 DBR1Q9UK59 544 aaKnown RBP22.99■■□□□ 1.27
TRIM28-201ENST00000253024 CENPFP49454 3210 aa22.99■■□□□ 1.27
TRIM28-201ENST00000253024 EIF3DO15371 548 aaKnown RBP eCLIP22.98■■□□□ 1.27
TRIM28-201ENST00000253024 MNAT1P51948 309 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 PPATQ06203 517 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 MREGQ8N565 214 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 EPS8L3Q8TE67 593 aaKnown RBP22.98■■□□□ 1.27
TRIM28-201ENST00000253024 TAAR1Q96RJ0 339 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 AZI2Q9H6S1 392 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 MRPL11Q9Y3B7 192 aaKnown RBP22.98■■□□□ 1.27
TRIM28-201ENST00000253024 FOCADQ5VW36 1801 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 VIL1P09327 827 aaKnown RBP22.98■■□□□ 1.27
TRIM28-201ENST00000253024 MXI1P50539 228 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 LRRC14Q15048 493 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 OGFOD1Q8N543 542 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 RAPGEF5Q92565 580 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 RUBCNQ92622 972 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 LARSQ9P2J5 1176 aaKnown RBP22.98■■□□□ 1.27
TRIM28-201ENST00000253024 NENFQ9UMX5 172 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 SIPA1L1O43166 1804 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 NF2P35240 595 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 LMO3Q8TAP4 145 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 ADAM33Q9BZ11 813 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 MTFR1LQ9H019 292 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 TMEM117Q9H0C3 514 aa22.98■■□□□ 1.27
TRIM28-201ENST00000253024 ANKRD31Q8N7Z5 1873 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 GOLGA6L10A0A0M3HER8 536 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 SPDYE2BA6NHP3 402 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 CCDC188H7C350 402 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 SPDYE6P0CI01 402 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 SSR1P43307 286 aaKnown RBP22.97■■□□□ 1.27
TRIM28-201ENST00000253024 MMP14P50281 582 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 CPLX4Q7Z7G2 160 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 ZNF653Q96CK0 615 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 MXRA8Q9BRK3 442 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 ANKRD62A6NC57 917 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 BCRP11274 1271 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 RPL21P46778 160 aaKnown RBP22.97■■□□□ 1.27
TRIM28-201ENST00000253024 BTNL9Q6UXG8 535 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 STXBP4Q6ZWJ1 553 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 PASD1Q8IV76 773 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 CHURC1Q8WUH1 139 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 TATDN2Q93075 761 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 HEMGNQ9BXL5 484 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 VCPKMTQ9H867 229 aa22.97■■□□□ 1.27
TRIM28-201ENST00000253024 BTNL10A8MVZ5 291 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 CLDN3O15551 220 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 ACSL3O95573 720 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 RARRES1P49788 294 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 PPP2R2AP63151 447 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 RASGEF1CQ8N431 466 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 PRELID2Q8N945 189 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 RNF25Q96BH1 459 aaPredicted RBP22.96■■□□□ 1.27
TRIM28-201ENST00000253024 WNK4Q96J92 1243 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 KREMEN1Q96MU8 473 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 ERP44Q9BS26 406 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 NUP85Q9BW27 656 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 PIK3CDO00329 1044 aa22.96■■□□□ 1.27
TRIM28-201ENST00000253024 MEFVO15553 781 aaPredicted RBP22.96■■□□□ 1.27
TRIM28-201ENST00000253024 YWHABP31946 246 aaKnown RBP22.96■■□□□ 1.27
TRIM28-201ENST00000253024 MTMR1Q13613 665 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms