RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 ARHGEF19Q8IW93 802 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 SLF2Q8IX21 1173 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 ZSWIM2Q8NEG5 633 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 MAGEC3Q8TD91 643 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 NAP1L4Q99733 375 aaKnown RBP13.38□□□□□ -0.27
NUP88-201ENST00000225696 CTTNBP2NLQ9P2B4 639 aa13.38□□□□□ -0.27
NUP88-201ENST00000225696 UBOX5O94941 541 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 FAM13AO94988 1023 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 COMTP21964 271 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 DRG2P55039 364 aaKnown RBP13.37□□□□□ -0.27
NUP88-201ENST00000225696 TCP10Q12799 353 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 MESDQ14696 234 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 TNFAIP8L3Q5GJ75 292 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 EXOC3L1Q86VI1 746 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 CCDC63Q8NA47 563 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 DYDC2Q96IM9 177 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 PCDHB18PQ96TA0 734 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 AGPAT1Q99943 283 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 HSD17B14Q9BPX1 270 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 AGPAT3Q9NRZ7 376 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 CTNNAL1Q9UBT7 734 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 A8MUI8 341 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 CTNNA2P26232 953 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 SREBF1P36956 1147 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 PSEN1P49768 467 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 UBXN2AP68543 259 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 MOXD1Q6UVY6 613 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 ZNF720Q7Z2F6 126 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 ANKS4BQ8N8V4 417 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 TBC1D22AQ8WUA7 517 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 PRCCQ92733 491 aaPredicted RBP13.37□□□□□ -0.27
NUP88-201ENST00000225696 P3H4Q92791 437 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 ELMO3Q96BJ8 720 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 MIEF2Q96C03 454 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 ZSWIM1Q9BR11 485 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 WDR18Q9BV38 432 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 VEZTQ9HBM0 779 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 FGFR1OP2Q9NVK5 253 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 PCYOX1Q9UHG3 505 aa13.37□□□□□ -0.27
NUP88-201ENST00000225696 RASGRF2O14827 1237 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 HGSO14964 777 aaPredicted RBP13.36□□□□□ -0.27
NUP88-201ENST00000225696 TBX3O15119 743 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 AGTP01019 485 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 GH1P01241 217 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 RARAP10276 462 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 MYL7Q01449 175 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 AP3B2Q13367 1082 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 MPP2Q14168 576 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 ITIH4Q14624 930 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 KIF22Q14807 665 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 SIX1Q15475 284 aaPredicted RBP13.36□□□□□ -0.27
NUP88-201ENST00000225696 CRY2Q49AN0 593 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 APOBEC3HQ6NTF7 200 aaKnown RBP13.36□□□□□ -0.27
NUP88-201ENST00000225696 EP400NLQ6ZTU2 488 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 RPAINQ86UA6 219 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 KIF2BQ8N4N8 673 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 NAP1L3Q99457 506 aaPredicted RBP13.36□□□□□ -0.27
NUP88-201ENST00000225696 PCIF1Q9H4Z3 704 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 UBE2TQ9NPD8 197 aaPredicted RBP13.36□□□□□ -0.27
NUP88-201ENST00000225696 AAASQ9NRG9 546 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 DNAJC17Q9NVM6 304 aaKnown RBP13.36□□□□□ -0.27
NUP88-201ENST00000225696 DMAC2Q9NW81 257 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 DIS3Q9Y2L1 958 aaKnown RBP13.36□□□□□ -0.27
NUP88-201ENST00000225696 PFASO15067 1338 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 THSD7AQ9UPZ6 1657 aa13.36□□□□□ -0.27
NUP88-201ENST00000225696 IGLV3-22A0A075B6J6 115 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 SLC26A4O43511 780 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 SNX3O60493 162 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 ACSL3O95573 720 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 ALAS1P13196 640 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 EZRP15311 586 aaKnown RBP13.35□□□□□ -0.27
NUP88-201ENST00000225696 CHRNA3P32297 505 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 JAG1P78504 1218 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 TRAPPC3LQ5T215 181 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 C6orf118Q5T5N4 469 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 FAM196AQ6ZSG2 479 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 COL23A1Q86Y22 540 aaPredicted RBP13.35□□□□□ -0.27
NUP88-201ENST00000225696 CCDC50Q8IVM0 306 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 THOC1Q96FV9 657 aaKnown RBP13.35□□□□□ -0.27
NUP88-201ENST00000225696 FAM20AQ96MK3 541 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 PWWP2AQ96N64 755 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 POLR3CQ9BUI4 534 aaPredicted RBP13.35□□□□□ -0.27
NUP88-201ENST00000225696 KCNQ5Q9NR82 932 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 SAMD15Q9P1V8 674 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 CNOT7Q9UIV1 285 aaKnown RBP13.35□□□□□ -0.27
NUP88-201ENST00000225696 PNMA3Q9UL41 463 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 TRIM33Q9UPN9 1127 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 CEP83Q9Y592 693 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 AFF2P51816 1311 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 DDTLA6NHG4 134 aaPredicted RBP13.35□□□□□ -0.27
NUP88-201ENST00000225696 TCP11X1B4DZS4 312 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 TULP1O00294 542 aaPredicted RBP13.35□□□□□ -0.27
NUP88-201ENST00000225696 SGPL1O95470 568 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 OAS1P00973 400 aaKnown RBP13.35□□□□□ -0.27
NUP88-201ENST00000225696 CDC25CP30307 473 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 CHKAP35790 457 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 NCALDP61601 193 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 PPP3CAQ08209 521 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 MYO1EQ12965 1108 aa13.35□□□□□ -0.27
NUP88-201ENST00000225696 DOK7Q18PE1 504 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms