RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SUGT1Q9Y2Z0 365 aa14.43□□□□□ -0.1
SF3A1-201ENST00000215793 CYP19A1P11511 503 aaPredicted RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 DHX34Q14147 1143 aaKnown RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 RNF219Q5W0B1 726 aaPredicted RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 TADA2BQ86TJ2 420 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 CDKL3Q8IVW4 592 aaPredicted RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 PPM1NQ8N819 430 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 IFT43Q96FT9 208 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 PDXKO00764 312 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 TEX33O43247 280 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 HAUS5O94927 633 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 COPB2P35606 906 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 HDLBPQ00341 1268 aaKnown RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 SHC4Q6S5L8 630 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 CENPKQ9BS16 269 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 ZFP69BQ9UJL9 534 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 TTC7AQ9ULT0 858 aaPredicted RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 SPP2Q13103 211 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 NBPF10Q6P3W6 841 aaKnown RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 SCN4BQ8IWT1 228 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 LRRC37BQ96QE4 947 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 KIFC3Q9BVG8 833 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 ACAD9Q9H845 621 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 PCSK1NQ9UHG2 260 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 CAPN11Q9UMQ6 739 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 L3MBTL1Q9Y468 752 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 KIAA0391O15091 583 aaKnown RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 CHUKO15111 745 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 ZFXP17010 805 aaPredicted RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 ZNF211Q13398 564 aaPredicted RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 KYAT1Q16773 422 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 GPD1LQ8N335 351 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 CYTH2Q99418 400 aa14.42□□□□□ -0.1
SF3A1-201ENST00000215793 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.42□□□□□ -0.1
SF3A1-201ENST00000215793 PI4K2BG5E9Z4 385 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 TDP2O95551 362 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 EYA4O95677 639 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 EEF1DP29692 281 aaKnown RBP14.41□□□□□ -0.1
SF3A1-201ENST00000215793 DUOXA2Q1HG44 320 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 CCDC144BQ3MJ40 725 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 EFHC2Q5JST6 749 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 PDLIM2Q96JY6 352 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 EIF2AK1Q9BQI3 630 aaKnown RBP14.41□□□□□ -0.1
SF3A1-201ENST00000215793 CCSER1Q9C0I3 900 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 PCDHA10Q9Y5I2 948 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 FOXP2O15409 715 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 GPS1Q13098 491 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 KRT33BQ14525 404 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 CCDC137Q6PK04 289 aaKnown RBP14.41□□□□□ -0.1
SF3A1-201ENST00000215793 HAUS6Q7Z4H7 955 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 GLYCTKQ8IVS8 523 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 TRIM62Q9BVG3 475 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 RBAKQ9NYW8 714 aaPredicted RBP14.41□□□□□ -0.1
SF3A1-201ENST00000215793 EFNA5P52803 228 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 PDXDC1Q6P996 788 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 RHPN2Q8IUC4 686 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 APOBEC3FQ8IUX4 373 aaKnown RBP14.41□□□□□ -0.1
SF3A1-201ENST00000215793 C2orf69Q8N8R5 385 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 HIPK4Q8NE63 616 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 SNF8Q96H20 258 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 POLR3CQ9BUI4 534 aaPredicted RBP14.41□□□□□ -0.1
SF3A1-201ENST00000215793 POLR3FQ9H1D9 316 aaPredicted RBP14.41□□□□□ -0.1
SF3A1-201ENST00000215793 ABCF3Q9NUQ8 709 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 ATF5Q9Y2D1 282 aaPredicted RBP14.41□□□□□ -0.1
SF3A1-201ENST00000215793 FAM196BA6NMK8 535 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 KRT14P02533 472 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 POLE2P56282 527 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.41□□□□□ -0.1
SF3A1-201ENST00000215793 TIPINQ9BVW5 301 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 ANLNQ9NQW6 1124 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 GTSE1Q9NYZ3 720 aa14.41□□□□□ -0.1
SF3A1-201ENST00000215793 TARSL2A2RTX5 802 aaKnown RBP14.4□□□□□ -0.1
SF3A1-201ENST00000215793 SYNE4Q8N205 404 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 RUBCNQ92622 972 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 ULK4Q96C45 1275 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 INPP5FQ9Y2H2 1132 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 KIF1BO60333 1816 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 PP2D1A8MPX8 630 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 GOLGA8MH3BSY2 632 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 ARFIP2P53365 341 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 ROR1Q01973 937 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 CEP55Q53EZ4 464 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 BEND6Q5SZJ8 279 aaPredicted RBP14.4□□□□□ -0.1
SF3A1-201ENST00000215793 ZNF746Q6NUN9 644 aaPredicted RBP14.4□□□□□ -0.1
SF3A1-201ENST00000215793 MMS22LQ6ZRQ5 1243 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 NCLNQ969V3 563 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 GRAMD1AQ96CP6 724 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 FAM84BQ96KN1 310 aaPredicted RBP14.4□□□□□ -0.1
SF3A1-201ENST00000215793 TUFT1Q9NNX1 390 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.4□□□□□ -0.1
SF3A1-201ENST00000215793 PARVAQ9NVD7 372 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 AGO2Q9UKV8 859 aaKnown RBP14.4□□□□□ -0.1
SF3A1-201ENST00000215793 A2ML1A8K2U0 1454 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 CDC42BPGQ6DT37 1551 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 EMSYQ7Z589 1322 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 MYO1CO00159 1063 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 MKRN3Q13064 507 aaKnown RBP14.4□□□□□ -0.1
SF3A1-201ENST00000215793 PDIA2Q13087 525 aaKnown RBP14.4□□□□□ -0.1
SF3A1-201ENST00000215793 ANGPTL8Q6UXH0 198 aa14.4□□□□□ -0.1
SF3A1-201ENST00000215793 RNF217Q8TC41 542 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms