RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Taf11Q99JX1 211 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Psmd9Q9CR00 222 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Erap1Q9EQH2 930 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Plcg1Q62077 1302 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Slc39a2G3X943 309 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Q3TQQ9 903 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ddx3yQ62095 658 aaKnown RBP12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 ZwilchQ8R060 589 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Rfc4Q99J62 364 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Tnip2Q99JG7 430 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ttc33Q9D6K7 262 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Trip4Q9QXN3 581 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Hfm1D3Z4R1 1434 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ddx55Q6ZPL9 600 aaKnown RBP12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 HibchQ8QZS1 385 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Hormad1Q9D5T7 392 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Cyp3a25O09158 503 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Atxn7l3bQ3UD01 97 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Oxsr1Q6P9R2 527 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Zfp341Q6PGC9 846 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Fbxo44Q8BK26 255 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Cog3Q8CI04 820 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Chit1Q9D7Q1 464 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 PtsQ9R1Z7 144 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Sik3Q6P4S6 1311 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Rfx8D3YU81 596 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 GmncQ3URY2 333 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Pcdhb7Q8CDY9 829 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Btbd6Q8K2J9 488 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Tmem119Q8R138 280 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Stx18Q8VDS8 334 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Zfp839E9PUU5 921 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Cyp4f17G3UW78 524 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 PtgdrP70263 357 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Tmc5Q32NZ6 967 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 E330034G19RikQ3UWX6 351 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Traf7Q922B6 594 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 TrabdQ99JY4 376 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Cyp4f16Q99N17 524 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ino80bQ99PT3 375 aaKnown RBP12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Nfe2l3Q9WTM4 660 aa12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Usp54Q8BL06 1588 aaKnown RBP12.62□□□□□ -0.39
Trim56-201ENSMUST00000054384 Gm3127E9Q9P5 263 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Gm3453K7N724 263 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Usp53P15975 1069 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Acap3Q6NXL5 833 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Nup93Q8BJ71 819 aaKnown RBP12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Snrnp27Q8K194 155 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Cnbd2Q9D5U8 673 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Pard6bQ9JK83 371 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Tulp1Q9Z273 543 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Gm3371F7CQW8 167 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Kcnh2O35219 1162 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 MlxipQ2VPU4 917 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Frmd8Q3UFK8 466 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Armc12Q80X86 340 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Fsd1lQ8BYN5 507 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ugp2Q91ZJ5 508 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Alpk1Q9CXB8 1231 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 TarsQ9D0R2 722 aaKnown RBP12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Add2Q9QYB8 725 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Serpinb6cW4VSP4 379 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Fam208aQ69ZR9 1610 aaKnown RBP12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Zfp212G3X8R7 492 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 CstaP56567 97 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Foxp2P58463 714 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Gucy2cQ3UWA6 1072 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 PRAG1Q571I4 1179 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 FntaQ61239 377 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Runx1t1Q61909 577 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Defb15Q8R2I5 79 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Trim8Q99PJ2 551 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Mei1Q9D4I2 1268 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Capn10Q9ESK3 666 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Gnrh1P13562 90 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Cab39Q06138 341 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Axdnd1Q3UZ57 424 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Alkbh8Q80Y20 664 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Q8C5C9 218 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Q8C6G1 249 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Rps6kb2Q9Z1M4 485 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Pabpc1lA2A5N3 607 aaKnown RBP12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ccdc144bE9PVZ3 520 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Kif23E9Q5G3 953 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Gm3460E9QAI8 215 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ap1g2O88512 791 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ces1eQ64176 562 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Pabpc6Q9D4E6 643 aaKnown RBP12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ino80Q6ZPV2 1559 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Csn1s1P19228 313 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 C2P21180 760 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Rhot1Q8BG51 631 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Alas1Q8VC19 642 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Micu3Q9CTY5 523 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Magi2Q9WVQ1 1275 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Stau1Q9Z108 487 aaKnown RBP12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Chek2Q9Z265 546 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 PxdnQ3UQ28 1475 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Ccdc127Q3TC33 260 aa12.61□□□□□ -0.39
Trim56-201ENSMUST00000054384 Proser2Q8C5R2 471 aa12.6□□□□□ -0.39
Retrieved 100 of 22,080 RNA–protein pairs in 30.7 ms