RNA–Protein interactions for RNA: ENST00000641597.1

PHGDH-223, Transcript of phosphoglycerate dehydrogenase, human

APPRIS P1 BASIC

Gene PHGDH, Length 2,585 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-223	ENST00000641597	IFI16	Q16666	785 aa	Known RBP	18.24	■□□□□ 0.51
PHGDH-223	ENST00000641597	C1orf220	Q5T0J3	134 aa		18.24	■□□□□ 0.51
PHGDH-223	ENST00000641597	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	18.24	■□□□□ 0.51
PHGDH-223	ENST00000641597	RFFL	Q8WZ73	363 aa		18.24	■□□□□ 0.51
PHGDH-223	ENST00000641597	POP1	Q99575	1024 aa	Known RBP	18.24	■□□□□ 0.51
PHGDH-223	ENST00000641597	ZHX2	Q9Y6X8	837 aa		18.24	■□□□□ 0.51
PHGDH-223	ENST00000641597	COL4A5	P29400	1685 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	TMOD1	P28289	359 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	HERC5	Q9UII4	1024 aa	Known RBP	18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	CCPG1	Q9ULG6	757 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	ZNF536	O15090	1300 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	MYO1F	O00160	1098 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	DLGAP5	Q15398	846 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	PLA2G4F	Q68DD2	849 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	STYK1	Q6J9G0	422 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	MIER3	Q7Z3K6	550 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	ZDHHC14	Q8IZN3	488 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	RASGEF1C	Q8N431	466 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	MXRA8	Q9BRK3	442 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	TMOD2	Q9NZR1	351 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	TELO2	Q9Y4R8	837 aa		18.23	■□□□□ 0.51
PHGDH-223	ENST00000641597	EBAG9	O00559	213 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	DHX15	O43143	795 aa	Known RBP	18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	NPEPPS	P55786	919 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	PCDHB18P	Q96TA0	734 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	STRA6	Q9BX79	667 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	MRPL11	Q9Y3B7	192 aa	Known RBP	18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	SLC16A4	O15374	487 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	ATP9A	O75110	1047 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	TMEM253	P0C7T8	217 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	EIF2AK2	P19525	551 aa	Known RBP	18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	LMNB1	P20700	586 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	MRPS9	P82933	396 aa	Known RBP	18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	POU5F1	Q01860	360 aa	Known RBP	18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	NBPF9	Q3BBW0	867 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	KDM7A	Q6ZMT4	941 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	ATP8B4	Q8TF62	1192 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597	ZNF341	Q9BYN7	854 aa		18.22	■□□□□ 0.51
PHGDH-223	ENST00000641597		A0A0A6YYK5	440 aa	Predicted RBP	18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	TCRBV7S2A1N4T	A0A589	114 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	CES2	O00748	559 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	SORBS3	O60504	671 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	SGPL1	O95470	568 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	FTL	P02792	175 aa	Predicted RBP	18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	ALAS1	P13196	640 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	DHX9	Q08211	1270 aa	Known RBP	18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	CHURC1	Q8WUH1	139 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	CCDC127	Q96BQ5	260 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	SAAL1	Q96ER3	474 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	MKNK1	Q9BUB5	465 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	TMBIM4	Q9HC24	238 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	RAVER2	Q9HCJ3	691 aa	Known RBP	18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	PPAN	Q9NQ55	473 aa	Known RBP	18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	ATP8A1	Q9Y2Q0	1164 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	ADRB2	P07550	413 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	CAP2	P40123	477 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	MAGEA9	P43362	315 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	LMBR1	Q8WVP7	490 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	FAM151A	Q8WW52	585 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	C18orf8	Q96DM3	657 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	AGPAT1	Q99943	283 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	TOPORS	Q9NS56	1045 aa	Predicted RBP	18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	CNOT8	Q9UFF9	292 aa	Known RBP	18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	USP20	Q9Y2K6	914 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	ALG6	Q9Y672	507 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	STK24	Q9Y6E0	443 aa		18.21	■□□□□ 0.51
PHGDH-223	ENST00000641597	GUCY2C	P25092	1073 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	RARRES1	P49788	294 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	MAP2K1	Q02750	393 aa	Predicted RBP	18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	SF3A3	Q12874	501 aa	Known RBP eCLIP	18.2	■□□□□ 0.5	1e-9	■■■■□ 22.2
PHGDH-223	ENST00000641597	RSBN1L	Q6PCB5	846 aa	Predicted RBP	18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	TMC3	Q7Z5M5	1100 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	CBWD2	Q8IUF1	395 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	RPUSD2	Q8IZ73	545 aa	Known RBP	18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	CALR3	Q96L12	384 aa	Known RBP	18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	CTTNBP2NL	Q9P2B4	639 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	ODF2L	Q9ULJ1	636 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	NCAN	O14594	1321 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	BHMG1	C9JSJ3	638 aa	Predicted RBP	18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	VAMP7	P51809	220 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	PEX3	P56589	373 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	CUL1	Q13616	776 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	SLC47A2	Q86VL8	602 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	CD302	Q8IX05	232 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	SYCE1	Q8N0S2	351 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	MICALL1	Q8N3F8	863 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	UHMK1	Q8TAS1	419 aa	Known RBP	18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	SEMA4D	Q92854	862 aa		18.2	■□□□□ 0.5
PHGDH-223	ENST00000641597	EGFR	P00533	1210 aa		18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	SHBG	P04278	402 aa		18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	MYCL	P12524	364 aa	Predicted RBP	18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	NSMF	Q6X4W1	530 aa		18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	CLEC4D	Q8WXI8	215 aa		18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	KAT2B	Q92831	832 aa		18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	CNKSR1	Q969H4	720 aa		18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	HSPBP1	Q9NZL4	362 aa		18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	SEL1L	Q9UBV2	794 aa		18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	INTU	Q9ULD6	942 aa		18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	SNX24	Q9Y343	169 aa		18.19	■□□□□ 0.5
PHGDH-223	ENST00000641597	ANKRD63	C9JTQ0	380 aa		18.19	■□□□□ 0.5

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