RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ANTXR2P58335 489 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 PPP2R2AP63151 447 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 RACK1P63244 317 aaKnown RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 EIF2B5Q13144 721 aaKnown RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 TP53BP2Q13625 1128 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 SEC23AQ15436 765 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 EZH2Q15910 746 aaKnown RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 NTRK3Q16288 839 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 SRSF7Q16629 238 aaKnown RBP eCLIP1.09□□□□□ -2.23
VPS35-212ENST00000640313 ZNF394Q53GI3 561 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 PIK3R6Q5UE93 754 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 EP400NLQ6ZTU2 488 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 C16orf59Q7L2K0 433 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 DOK3Q7L591 496 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 FAM83AQ86UY5 434 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 OSTM1Q86WC4 334 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 FAM178BQ8IXR5 827 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 SAMD14Q8IZD0 417 aaPredicted RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 ZBTB8BQ8NAP8 495 aaPredicted RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 CPEB3Q8NE35 698 aaKnown RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 ASB10Q8WXI3 467 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 DPF1Q92782 380 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 PDLIM2Q96JY6 352 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 GBP4Q96PP9 640 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 ADAM2Q99965 735 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 CPPED1Q9BRF8 314 aaPredicted RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 ALG1Q9BT22 464 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 IER2Q9BTL4 223 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 EPN3Q9H201 632 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 KLK15Q9H2R5 256 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 C14orf93Q9H972 538 aaKnown RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 METTL5Q9NRN9 209 aaKnown RBP1.09□□□□□ -2.23
VPS35-212ENST00000640313 WWOXQ9NZC7 414 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 TRPM5Q9NZQ8 1165 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 ZNF112Q9UJU3 913 aa1.09□□□□□ -2.23
VPS35-212ENST00000640313 A0A1W2PQU0 124 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 UNC119BA6NIH7 251 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 MARCH11A6NNE9 402 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 ZNF561-AS1K7EIQ3 104 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 LEFTY2O00292 366 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 MGST3O14880 152 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 KRT86O43790 486 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 DNAJC6O75061 913 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 MOSPD3O75425 235 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 SPDEFO95238 335 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 MT3P25713 68 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 SDHAP31040 664 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 CCT4P50991 539 aaKnown RBP1.08□□□□□ -2.24
VPS35-212ENST00000640313 JAM2P57087 298 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 LACTBP83111 547 aaPredicted RBP1.08□□□□□ -2.24
VPS35-212ENST00000640313 ALDH6A1Q02252 535 aaKnown RBP1.08□□□□□ -2.24
VPS35-212ENST00000640313 SCAPQ12770 1279 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 PAK1Q13153 545 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 PAK2Q13177 524 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 KRT81Q14533 505 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 DGKDQ16760 1214 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 MIDNQ504T8 468 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 KRT40Q6A162 431 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 AWAT2Q6E213 333 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 DRICH1Q6PGQ1 229 aaPredicted RBP1.08□□□□□ -2.24
VPS35-212ENST00000640313 C6orf15Q6UXA7 325 aaPredicted RBP1.08□□□□□ -2.24
VPS35-212ENST00000640313 USP43Q70EL4 1123 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 DPH6Q7L8W6 267 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 GPRIN1Q7Z2K8 1008 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 PTRH1Q86Y79 214 aaKnown RBP1.08□□□□□ -2.24
VPS35-212ENST00000640313 ZDHHC17Q8IUH5 632 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 SLC44A3Q8N4M1 653 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 TMEM87AQ8NBN3 555 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 HASPINQ8TF76 798 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 FBXW5Q969U6 566 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 FUBP1Q96AE4 644 aaKnown RBP1.08□□□□□ -2.24
VPS35-212ENST00000640313 TIMP4Q99727 224 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 CPEB1Q9BZB8 566 aaKnown RBP1.08□□□□□ -2.24
VPS35-212ENST00000640313 SMURF1Q9HCE7 757 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 FLRT1Q9NZU1 646 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 CLCA2Q9UQC9 943 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 BTBD3Q9Y2F9 522 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 PCDHGB7Q9Y5F8 929 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 ZNF521Q96K83 1311 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 CACNA1IQ9P0X4 2223 aa1.08□□□□□ -2.24
VPS35-212ENST00000640313 RASSF10A6NK89 507 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 AGRPO00253 132 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 GSTA4O15217 222 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 FOXP2O15409 715 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 DAPK3O43293 454 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 FOSP01100 380 aaPredicted RBP1.07□□□□□ -2.24
VPS35-212ENST00000640313 PRKCGP05129 697 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 SNHG28P0DPA3 235 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 ITGAMP11215 1152 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 FGFR1P11362 822 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 WT1P19544 449 aaPredicted RBP1.07□□□□□ -2.24
VPS35-212ENST00000640313 FDXRP22570 491 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 ITPKBP27987 946 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 NASPP49321 788 aaPredicted RBP1.07□□□□□ -2.24
VPS35-212ENST00000640313 WNT3AP56704 352 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 RNASE9P60153 205 aaKnown RBP1.07□□□□□ -2.24
VPS35-212ENST00000640313 TUBA4AP68366 448 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 FANCCQ00597 558 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 HYAL1Q12794 435 aa1.07□□□□□ -2.24
VPS35-212ENST00000640313 MRPL49Q13405 166 aaKnown RBP1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms