RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 CAPSQ13938 189 aa19.74■□□□□ 0.75
PNKP-230ENST00000638016 ECM1Q16610 540 aa19.74■□□□□ 0.75
PNKP-230ENST00000638016 UBXN11Q5T124 520 aa19.74■□□□□ 0.75
PNKP-230ENST00000638016 PTCRAQ6ISU1 281 aaPredicted RBP19.74■□□□□ 0.75
PNKP-230ENST00000638016 FAM43BQ6ZT52 329 aaPredicted RBP19.74■□□□□ 0.75
PNKP-230ENST00000638016 TCP11Q8WWU5 503 aa19.74■□□□□ 0.75
PNKP-230ENST00000638016 INO80BQ9C086 356 aaPredicted RBP19.74■□□□□ 0.75
PNKP-230ENST00000638016 UPF2Q9HAU5 1272 aaKnown RBP19.74■□□□□ 0.75
PNKP-230ENST00000638016 CD320Q9NPF0 282 aa19.74■□□□□ 0.75
PNKP-230ENST00000638016 CHST12Q9NRB3 414 aa19.74■□□□□ 0.75
PNKP-230ENST00000638016 ANKEF1Q9NU02 776 aa19.74■□□□□ 0.75
PNKP-230ENST00000638016 NT5C1B-RDH14C9J2C7 533 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 HOXA2O43364 376 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 B4GALT3O60512 393 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 LAG3P18627 525 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 GLRA2P23416 452 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 ARL2P36404 184 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 AFF1P51825 1210 aaKnown RBP19.73■□□□□ 0.75
PNKP-230ENST00000638016 CTC1Q2NKJ3 1217 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 KCNT2Q6UVM3 1135 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 SRGAP1Q7Z6B7 1085 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 KHSRPQ92945 711 aaKnown RBP eCLIP19.73■□□□□ 0.75
PNKP-230ENST00000638016 CCDC43Q96MW1 224 aaKnown RBP19.73■□□□□ 0.75
PNKP-230ENST00000638016 POLR3FQ9H1D9 316 aaPredicted RBP19.73■□□□□ 0.75
PNKP-230ENST00000638016 RNF216Q9NWF9 866 aaPredicted RBP19.73■□□□□ 0.75
PNKP-230ENST00000638016 INPP5FQ9Y2H2 1132 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 C5orf42Q9H799 3197 aa19.73■□□□□ 0.75
PNKP-230ENST00000638016 PER2O15055 1255 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 GAS2O43903 313 aaKnown RBP19.72■□□□□ 0.75
PNKP-230ENST00000638016 DGAT1O75907 488 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 EOMESO95936 686 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 GJB2P29033 226 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 NRIP1P48552 1158 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 TMEM173Q86WV6 379 aaPredicted RBP19.72■□□□□ 0.75
PNKP-230ENST00000638016 CPB2Q96IY4 423 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 TRAIPQ9BWF2 469 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 POLD4Q9HCU8 107 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 TUFT1Q9NNX1 390 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 TLR9Q9NR96 1032 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 AAASQ9NRG9 546 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 NOL7Q9UMY1 257 aaKnown RBP19.72■□□□□ 0.75
PNKP-230ENST00000638016 PCDHB2Q9Y5E7 798 aa19.72■□□□□ 0.75
PNKP-230ENST00000638016 PP2D1A8MPX8 630 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 B4GALT5O43286 388 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 TSPAN1O60635 241 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 GLP2RO95838 553 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 PTENP60484 403 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 PTGDRQ13258 359 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 IL17AQ16552 155 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 PLPP4Q5VZY2 271 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 MCTP1Q6DN14 999 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 AGMOQ6ZNB7 445 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 EXOC8Q8IYI6 725 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 MICAL1Q8TDZ2 1067 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 ZNF558Q96NG5 402 aa19.71■□□□□ 0.75
PNKP-230ENST00000638016 EIF2AQ9BY44 585 aaKnown RBP19.71■□□□□ 0.75
PNKP-230ENST00000638016 GRXCR2A6NFK2 248 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 INO80B-WBP1J3KQ70 363 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 FSCN2O14926 492 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 ASAP2O43150 1006 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 OFD1O75665 1012 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 TRAPPC10P48553 1259 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 MBTD1Q05BQ5 628 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 ORC2Q13416 577 aaPredicted RBP19.7■□□□□ 0.74
PNKP-230ENST00000638016 AMHR2Q16671 573 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 CDR2LQ86X02 465 aaPredicted RBP19.7■□□□□ 0.74
PNKP-230ENST00000638016 SLC39A11Q8N1S5 342 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 VN1R2Q8NFZ6 395 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 BCL7CQ8WUZ0 217 aaPredicted RBP19.7■□□□□ 0.74
PNKP-230ENST00000638016 BSNDQ8WZ55 320 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 MRPS27Q92552 414 aaKnown RBP19.7■□□□□ 0.74
PNKP-230ENST00000638016 POLR3CQ9BUI4 534 aaPredicted RBP19.7■□□□□ 0.74
PNKP-230ENST00000638016 TBC1D13Q9NVG8 400 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 BARX2Q9UMQ3 279 aaPredicted RBP19.7■□□□□ 0.74
PNKP-230ENST00000638016 HES2Q9Y543 173 aa19.7■□□□□ 0.74
PNKP-230ENST00000638016 ZNF623O75123 536 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 ZC3H11AO75152 810 aaKnown RBP eCLIP19.69■□□□□ 0.74
PNKP-230ENST00000638016 ERLIN2O94905 339 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 RPA1P27694 616 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 CDC25AP30304 524 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 FXR2P51116 673 aaKnown RBP eCLIP19.69■□□□□ 0.74
PNKP-230ENST00000638016 BCAR1P56945 870 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 ADAM15Q13444 863 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 MXD4Q14582 209 aaPredicted RBP19.69■□□□□ 0.74
PNKP-230ENST00000638016 SMG8Q8ND04 991 aaKnown RBP19.69■□□□□ 0.74
PNKP-230ENST00000638016 TCF25Q9BQ70 676 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 GBP3Q9H0R5 595 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 RNF39Q9H2S5 420 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 NRDE2Q9H7Z3 1164 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 CLEC1BQ9P126 229 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 DNAJB4Q9UDY4 337 aa19.69■□□□□ 0.74
PNKP-230ENST00000638016 HIDE1A8MVS5 230 aa19.68■□□□□ 0.74
PNKP-230ENST00000638016 CCT6AP40227 531 aaKnown RBP19.68■□□□□ 0.74
PNKP-230ENST00000638016 NDUFV1P49821 464 aa19.68■□□□□ 0.74
PNKP-230ENST00000638016 RAB27AP51159 221 aa19.68■□□□□ 0.74
PNKP-230ENST00000638016 PLCB3Q01970 1234 aa19.68■□□□□ 0.74
PNKP-230ENST00000638016 UBE3AQ05086 875 aa19.68■□□□□ 0.74
PNKP-230ENST00000638016 NOMO2Q5JPE7 1267 aa19.68■□□□□ 0.74
PNKP-230ENST00000638016 GLB1LQ6UWU2 654 aa19.68■□□□□ 0.74
PNKP-230ENST00000638016 ZNF280BQ86YH2 543 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms