RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CAPSQ13938 189 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 TFDP1Q14186 410 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 GRIN2CQ14957 1233 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 KARSQ15046 597 aaKnown RBP10.92□□□□□ -0.66
CLN3-261ENST00000637686 TMEM119Q4V9L6 283 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 FAM43BQ6ZT52 329 aaPredicted RBP10.92□□□□□ -0.66
CLN3-261ENST00000637686 USP49Q70CQ1 688 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 CATSPER4Q7RTX7 472 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 SRGAP1Q7Z6B7 1085 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 NPAS4Q8IUM7 802 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 ENGASEQ8NFI3 743 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 GPT2Q8TD30 523 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 CALML4Q96GE6 196 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 CCDC34Q96HJ3 373 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 EPSTI1Q96J88 318 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 MINDY3Q9H8M7 445 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 CERS4Q9HA82 394 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 C1orf112Q9NSG2 853 aa10.92□□□□□ -0.66
CLN3-261ENST00000637686 TTC3P53804 2025 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 LINC01553A4QN01 128 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 C9IYK1 514 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 SSBP05455 408 aaKnown RBP eCLIP10.91□□□□□ -0.66
CLN3-261ENST00000637686 PLA2G4BP0C869 781 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 STAG3L1P0CL83 205 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 PLCG1P19174 1290 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 PHKA2P46019 1235 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 PTENP60484 403 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 TAP1Q03518 808 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 POU5F1BQ06416 359 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 SNW1Q13573 536 aaKnown RBP10.91□□□□□ -0.66
CLN3-261ENST00000637686 RINT1Q6NUQ1 792 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 C1orf186Q6ZWK4 172 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 SLC24A5Q71RS6 500 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 FMR1NBQ8N0W7 255 aaPredicted RBP10.91□□□□□ -0.66
CLN3-261ENST00000637686 CRIPAKQ8N1N5 446 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 SYT2Q8N9I0 419 aaPredicted RBP10.91□□□□□ -0.66
CLN3-261ENST00000637686 RASSF8Q8NHQ8 419 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 SYMPKQ92797 1274 aaKnown RBP10.91□□□□□ -0.66
CLN3-261ENST00000637686 GUCD1Q96NT3 240 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 CDX2Q99626 313 aaPredicted RBP10.91□□□□□ -0.66
CLN3-261ENST00000637686 RUSC1Q9BVN2 902 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 CUEDC2Q9H467 287 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 MAGEF1Q9HAY2 307 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 LRFN2Q9ULH4 789 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 PCDHB7Q9Y5E2 793 aa10.91□□□□□ -0.66
CLN3-261ENST00000637686 LRRIQ4A6NIV6 560 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 INO80B-WBP1J3KQ70 363 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 HIP1RO75146 1068 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 DGKIO75912 1065 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 LETM1O95202 739 aaPredicted RBP10.9□□□□□ -0.66
CLN3-261ENST00000637686 PFKFB1P16118 471 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 SYKP43405 635 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 SLC12A3P55017 1021 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 FAM189BP81408 668 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 MBTD1Q05BQ5 628 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 KANK3Q6NY19 840 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 SPRED2Q7Z698 418 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 IFNLR1Q8IU57 520 aaPredicted RBP10.9□□□□□ -0.66
CLN3-261ENST00000637686 SP7Q8TDD2 431 aaPredicted RBP10.9□□□□□ -0.66
CLN3-261ENST00000637686 LRRC15Q8TF66 581 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 BSNDQ8WZ55 320 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 ZNF689Q96CS4 500 aaPredicted RBP10.9□□□□□ -0.66
CLN3-261ENST00000637686 PRDM12Q9H4Q4 367 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 CHST12Q9NRB3 414 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 BLOC1S4Q9NUP1 217 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 AGPAT5Q9NUQ2 364 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 CCDC39Q9UFE4 941 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 KCNH3Q9ULD8 1083 aa10.9□□□□□ -0.66
CLN3-261ENST00000637686 PIN4Q9Y237 131 aaKnown RBP10.9□□□□□ -0.66
CLN3-261ENST00000637686 NPHP3-ACAD11A0A0J9YXS1 232 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 A0A0U1RQF3 1178 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 KINO60870 393 aaKnown RBP10.89□□□□□ -0.67
CLN3-261ENST00000637686 ERLIN2O94905 339 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 MYL1P05976 194 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 LIG1P18858 919 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 GUCY2CP25092 1073 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 NAMPTP43490 491 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 GATMP50440 423 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 NDUFA8P51970 172 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 RAD51AP2Q09MP3 1159 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 DHX8Q14562 1220 aaKnown RBP10.89□□□□□ -0.67
CLN3-261ENST00000637686 MCM6Q14566 821 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 CCDC183Q5T5S1 534 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 TWF2Q6IBS0 349 aaKnown RBP10.89□□□□□ -0.67
CLN3-261ENST00000637686 RBM43Q6ZSC3 357 aaKnown RBP10.89□□□□□ -0.67
CLN3-261ENST00000637686 ECHDC2Q86YB7 292 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 IQUBQ8NA54 791 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 DEPTORQ8TB45 409 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 MYLIPQ8WY64 445 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 ARNTL2Q8WYA1 636 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 KIFAP3Q92845 792 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 CPB2Q96IY4 423 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 IFT74Q96LB3 600 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 KIFC3Q9BVG8 833 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 NFKBIZQ9BYH8 718 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 PANK2Q9BZ23 570 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 GOLPH3LQ9H4A5 285 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 RC3H2Q9HBD1 1191 aaKnown RBP10.89□□□□□ -0.67
CLN3-261ENST00000637686 TMEM161AQ9NX61 479 aa10.89□□□□□ -0.67
CLN3-261ENST00000637686 DACT1Q9NYF0 836 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms