RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 EPHB6O15197 1021 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 IGHA2P01877 340 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 HOXD8P13378 290 aaPredicted RBP18.44■□□□□ 0.54
CLN3-252ENST00000636907 FECHP22830 423 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 CNGA1P29973 690 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 ADSSP30520 456 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 CAPSQ13938 189 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 DEFB115Q30KQ5 88 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 TCERG1LQ5VWI1 586 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 IER5Q5VY09 327 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 SLC39A4Q6P5W5 647 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 EXOC8Q8IYI6 725 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 LRRC71Q8N4P6 559 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 XXYLT1Q8NBI6 393 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 ZSWIM2Q8NEG5 633 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 DEPTORQ8TB45 409 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 IQCDQ96DY2 449 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 CAPNS2Q96L46 248 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 ARHGAP39Q9C0H5 1083 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 SUGCTQ9HAC7 445 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 ZSWIM8A7E2V4 1837 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 A0A1W2PQJ5 194 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 GAS2O43903 313 aaKnown RBP18.44■□□□□ 0.54
CLN3-252ENST00000636907 INSRRP14616 1297 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 ABCD1P33897 745 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 CCAR2Q8N163 923 aaKnown RBP18.44■□□□□ 0.54
CLN3-252ENST00000636907 RDH13Q8NBN7 331 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 TCP11Q8WWU5 503 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 PRPF31Q8WWY3 499 aaKnown RBP18.44■□□□□ 0.54
CLN3-252ENST00000636907 DNAJC7Q99615 494 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 CRACR2AQ9BSW2 395 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 NAA15Q9BXJ9 866 aaKnown RBP18.44■□□□□ 0.54
CLN3-252ENST00000636907 KCND1Q9NSA2 647 aa18.44■□□□□ 0.54
CLN3-252ENST00000636907 GNEQ9Y223 722 aaKnown RBP18.44■□□□□ 0.54
CLN3-252ENST00000636907 SIP14410 1827 aa18.43■□□□□ 0.54
CLN3-252ENST00000636907 SOWAHDA6NJG2 315 aa18.43■□□□□ 0.54
CLN3-252ENST00000636907 PSMC4P43686 418 aa18.43■□□□□ 0.54
CLN3-252ENST00000636907 FCGRTP55899 365 aa18.43■□□□□ 0.54
CLN3-252ENST00000636907 ZBED6P86452 979 aa18.43■□□□□ 0.54
CLN3-252ENST00000636907 ZNF484Q5JVG2 852 aa18.43■□□□□ 0.54
CLN3-252ENST00000636907 NEK11Q8NG66 645 aa18.43■□□□□ 0.54
CLN3-252ENST00000636907 OR8K1Q8NGG5 319 aa18.43■□□□□ 0.54
CLN3-252ENST00000636907 JPH2Q9BR39 696 aaPredicted RBP18.43■□□□□ 0.54
CLN3-252ENST00000636907 LSM14BQ9BX40 385 aaKnown RBP18.43■□□□□ 0.54
CLN3-252ENST00000636907 H3BRB1 525 aa18.42■□□□□ 0.54
CLN3-252ENST00000636907 HNRNPDLO14979 420 aaKnown RBP18.42■□□□□ 0.54
CLN3-252ENST00000636907 DYNC1LI2O43237 492 aaPredicted RBP18.42■□□□□ 0.54
CLN3-252ENST00000636907 C22orf31O95567 290 aa18.42■□□□□ 0.54
CLN3-252ENST00000636907 SCP2P22307 547 aa18.42■□□□□ 0.54
CLN3-252ENST00000636907 IGBP1P78318 339 aa18.42■□□□□ 0.54
CLN3-252ENST00000636907 LACTBP83111 547 aaPredicted RBP18.42■□□□□ 0.54
CLN3-252ENST00000636907 BFSP1Q12934 665 aa18.42■□□□□ 0.54
CLN3-252ENST00000636907 DGKDQ16760 1214 aa18.42■□□□□ 0.54
CLN3-252ENST00000636907 BRDTQ58F21 947 aaPredicted RBP18.42■□□□□ 0.54
CLN3-252ENST00000636907 PSPC1Q8WXF1 523 aaKnown RBP18.42■□□□□ 0.54
CLN3-252ENST00000636907 LENG1Q96BZ8 264 aaPredicted RBP18.42■□□□□ 0.54
CLN3-252ENST00000636907 ZBTB10Q96DT7 871 aa18.42■□□□□ 0.54
CLN3-252ENST00000636907 BICD1Q96G01 975 aa18.42■□□□□ 0.54
CLN3-252ENST00000636907 TUT1Q9H6E5 874 aaKnown RBP18.42■□□□□ 0.54
CLN3-252ENST00000636907 CREBZFQ9NS37 354 aa18.42■□□□□ 0.54
CLN3-252ENST00000636907 TRMT1Q9NXH9 659 aaKnown RBP18.42■□□□□ 0.54
CLN3-252ENST00000636907 ZNF215Q9UL58 517 aaPredicted RBP18.42■□□□□ 0.54
CLN3-252ENST00000636907 MAPK13O15264 365 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 ADCY3O60266 1144 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 NOL4O94818 638 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 TRIM49P0CI25 452 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 TRIM49CP0CI26 452 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 LAMTOR4Q0VGL1 99 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 STRN3Q13033 797 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 MTF1Q14872 753 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 RAD9BQ6WBX8 426 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 TMEM134Q9H6X4 195 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 SUCLA2Q9P2R7 463 aaPredicted RBP18.41■□□□□ 0.54
CLN3-252ENST00000636907 USP20Q9Y2K6 914 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 GOLGA8IPA6NC78 632 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 A6NJR5 290 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 GOLGA8JA6NMD2 632 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 K7ERI5 159 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 ADRB2P07550 413 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 KRT13P13646 458 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 APBA1Q02410 837 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 MXD4Q14582 209 aaPredicted RBP18.41■□□□□ 0.54
CLN3-252ENST00000636907 EFCAB12Q6NXP0 572 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 TOGARAM2Q6ZUX3 1019 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 INTS8Q75QN2 995 aaKnown RBP18.41■□□□□ 0.54
CLN3-252ENST00000636907 TLK2Q86UE8 772 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 TMTC1Q8IUR5 882 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 SAAL1Q96ER3 474 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 GABRQQ9UN88 632 aa18.41■□□□□ 0.54
CLN3-252ENST00000636907 COL1A2P08123 1366 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 PHLPP2Q6ZVD8 1323 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 EDN1P05305 212 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 LIG4P49917 911 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 CLCN3P51790 818 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 EXOC3L4Q17RC7 722 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 TSR1Q2NL82 804 aaKnown RBP18.4■□□□□ 0.54
CLN3-252ENST00000636907 CDCA2Q69YH5 1023 aaPredicted RBP18.4■□□□□ 0.54
CLN3-252ENST00000636907 DPY19L2P1Q6NXN4 242 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 WDR59Q6PJI9 974 aa18.4■□□□□ 0.54
CLN3-252ENST00000636907 CYP26C1Q6V0L0 522 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms