RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 KIFAP3Q92845 792 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 TGS1Q96RS0 853 aaKnown RBP20.03■□□□□ 0.8
CLN3-239ENST00000628023 PANK2Q9BZ23 570 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 INO80BQ9C086 356 aaPredicted RBP20.03■□□□□ 0.8
CLN3-239ENST00000628023 INSL6Q9Y581 213 aa20.03■□□□□ 0.8
CLN3-239ENST00000628023 LCHNA4D1U4 455 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 LRRIQ4A6NIV6 560 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 ARHGEF15O94989 841 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 KRT18P05783 430 aaKnown RBP20.02■□□□□ 0.8
CLN3-239ENST00000628023 SFPQP23246 707 aaKnown RBP eCLIP20.02■□□□□ 0.8
CLN3-239ENST00000628023 GLRA2P23416 452 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 RAD51AP2Q09MP3 1159 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 MCM6Q14566 821 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 TCTN1Q2MV58 587 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 TPRNQ4KMQ1 711 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 SHC4Q6S5L8 630 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 TMCO2Q7Z6W1 182 aaPredicted RBP20.02■□□□□ 0.8
CLN3-239ENST00000628023 FAM228AQ86W67 206 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 GPBP1Q86WP2 473 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 IFT74Q96LB3 600 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 DRC1Q96MC2 740 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 IPO9Q96P70 1041 aaKnown RBP20.02■□□□□ 0.8
CLN3-239ENST00000628023 TIPINQ9BVW5 301 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 FTHL17Q9BXU8 183 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 GDPD2Q9HCC8 539 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 ERVK-5Q9HDB9 667 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 LMCD1Q9NZU5 365 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 KCND2Q9NZV8 630 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 ST3GAL5Q9UNP4 418 aa20.02■□□□□ 0.8
CLN3-239ENST00000628023 NCOR1O75376 2440 aa20.02■□□□□ 0.79
CLN3-239ENST00000628023 HIP1RO75146 1068 aa20.01■□□□□ 0.79
CLN3-239ENST00000628023 CSDE1O75534 798 aaKnown RBP20.01■□□□□ 0.79
CLN3-239ENST00000628023 CAPSQ13938 189 aa20.01■□□□□ 0.79
CLN3-239ENST00000628023 FAM117BQ6P1L5 589 aa20.01■□□□□ 0.79
CLN3-239ENST00000628023 BLOC1S4Q9NUP1 217 aa20.01■□□□□ 0.79
CLN3-239ENST00000628023 DENND3A2RUS2 1198 aa20■□□□□ 0.79
CLN3-239ENST00000628023 FGFR4P22455 802 aa20■□□□□ 0.79
CLN3-239ENST00000628023 GUCY2CP25092 1073 aa20■□□□□ 0.79
CLN3-239ENST00000628023 ERVK-21P61565 698 aa20■□□□□ 0.79
CLN3-239ENST00000628023 PPP2R5AQ15172 486 aa20■□□□□ 0.79
CLN3-239ENST00000628023 RESP18Q5W5W9 173 aa20■□□□□ 0.79
CLN3-239ENST00000628023 C1orf186Q6ZWK4 172 aa20■□□□□ 0.79
CLN3-239ENST00000628023 CATSPER4Q7RTX7 472 aa20■□□□□ 0.79
CLN3-239ENST00000628023 SRGAP1Q7Z6B7 1085 aa20■□□□□ 0.79
CLN3-239ENST00000628023 MYOCDQ8IZQ8 938 aa20■□□□□ 0.79
CLN3-239ENST00000628023 LRRC15Q8TF66 581 aa20■□□□□ 0.79
CLN3-239ENST00000628023 HLA-CQ95604 372 aa20■□□□□ 0.79
CLN3-239ENST00000628023 POLD4Q9HCU8 107 aa20■□□□□ 0.79
CLN3-239ENST00000628023 SPTBN5Q9NRC6 3674 aaKnown RBP20■□□□□ 0.79
CLN3-239ENST00000628023 TCHHQ07283 1943 aa20■□□□□ 0.79
CLN3-239ENST00000628023 MICAL3Q7RTP6 2002 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 A0A087X0B3 334 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 LINC01553A4QN01 128 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 INO80B-WBP1J3KQ70 363 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 ERLIN2O94905 339 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 IBSPP21815 317 aaPredicted RBP19.99■□□□□ 0.79
CLN3-239ENST00000628023 TFF2Q03403 129 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 DMP1Q13316 513 aaPredicted RBP19.99■□□□□ 0.79
CLN3-239ENST00000628023 SV2BQ7L1I2 683 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 ZBTB8OSQ8IWT0 167 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 DEPTORQ8TB45 409 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 DHX58Q96C10 678 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 IFT122Q9HBG6 1241 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 MTUS1Q9ULD2 1270 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 PTPRSQ13332 1948 aa19.99■□□□□ 0.79
CLN3-239ENST00000628023 NPHP3-ACAD11A0A0J9YXS1 232 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 GOLGA6L4A6NEF3 574 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 TBCAO75347 108 aaKnown RBP19.98■□□□□ 0.79
CLN3-239ENST00000628023 BMP1P13497 986 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 ZSCAN20P17040 1043 aaPredicted RBP19.98■□□□□ 0.79
CLN3-239ENST00000628023 NAMPTP43490 491 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 PTENP60484 403 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 CACNB1Q02641 598 aaPredicted RBP19.98■□□□□ 0.79
CLN3-239ENST00000628023 NAALADL2Q58DX5 795 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 ADALQ6DHV7 355 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.98■□□□□ 0.79
CLN3-239ENST00000628023 IQUBQ8NA54 791 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 GDPD5Q8WTR4 605 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 BSNDQ8WZ55 320 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 PYM1Q9BRP8 204 aaKnown RBP19.98■□□□□ 0.79
CLN3-239ENST00000628023 C2orf40Q9H1Z8 148 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 TMX1Q9H3N1 280 aa19.98■□□□□ 0.79
CLN3-239ENST00000628023 CCDC169A6NNP5 214 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 POLR2DO15514 142 aaKnown RBP19.97■□□□□ 0.79
CLN3-239ENST00000628023 LPXNO60711 386 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 FAM13AO94988 1023 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 CMA1P23946 247 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 PEX3P56589 373 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 POU5F1BQ06416 359 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 CSPP1Q1MSJ5 1256 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 SPRED2Q7Z698 418 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 YME1L1Q96TA2 773 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 ADAM2Q99965 735 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 REEP2Q9BRK0 252 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 CUEDC2Q9H467 287 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 ZHX3Q9H4I2 956 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 KCNH3Q9ULD8 1083 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 ODF2LQ9ULJ1 636 aa19.97■□□□□ 0.79
CLN3-239ENST00000628023 PIN4Q9Y237 131 aaKnown RBP19.97■□□□□ 0.79
CLN3-239ENST00000628023 UPP2O95045 317 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms