RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CUEDC2Q9H467 287 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 CHST12Q9NRB3 414 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 C1orf112Q9NSG2 853 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 AGPAT5Q9NUQ2 364 aa22.44■■□□□ 1.18
PTCD3-220ENST00000627371 ADGRA3Q8IWK6 1321 aa22.43■■□□□ 1.18
PTCD3-220ENST00000627371 ERLIN2O94905 339 aa22.43■■□□□ 1.18
PTCD3-220ENST00000627371 GJB5O95377 273 aa22.43■■□□□ 1.18
PTCD3-220ENST00000627371 PEX3P56589 373 aa22.43■■□□□ 1.18
PTCD3-220ENST00000627371 CACNB1Q02641 598 aaPredicted RBP22.43■■□□□ 1.18
PTCD3-220ENST00000627371 TMCO2Q7Z6W1 182 aaPredicted RBP22.43■■□□□ 1.18
PTCD3-220ENST00000627371 DHX58Q96C10 678 aa22.43■■□□□ 1.18
PTCD3-220ENST00000627371 PYM1Q9BRP8 204 aaKnown RBP22.43■■□□□ 1.18
PTCD3-220ENST00000627371 PBX4Q9BYU1 374 aa22.43■■□□□ 1.18
PTCD3-220ENST00000627371 PIN4Q9Y237 131 aaKnown RBP22.43■■□□□ 1.18
PTCD3-220ENST00000627371 A0A1W2PQ27 194 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 A0A1W2PQ64 194 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 A0A1W2PQD8 194 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 POLR2DO15514 142 aaKnown RBP22.42■■□□□ 1.18
PTCD3-220ENST00000627371 KRT18P05783 430 aaKnown RBP22.42■■□□□ 1.18
PTCD3-220ENST00000627371 PLS3P13797 630 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 NPTX2P47972 431 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 GIT2Q14161 759 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 RAB30Q15771 203 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 SLC24A5Q71RS6 500 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 KIFC3Q9BVG8 833 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 TNMDQ9H2S6 317 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 DACT1Q9NYF0 836 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 KCNH3Q9ULD8 1083 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 FNDC1Q4ZHG4 1894 aaPredicted RBP22.42■■□□□ 1.18
PTCD3-220ENST00000627371 SZT2Q5T011 3432 aa22.42■■□□□ 1.18
PTCD3-220ENST00000627371 FAM237AA0A1B0GTK4 181 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 MYMKA6NI61 221 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 SFI1A8K8P3 1242 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 C9IYK1 514 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 TSPAN1O60635 241 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 PFKFB1P16118 471 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 PBX2P40425 430 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 SARSP49591 514 aaKnown RBP22.41■■□□□ 1.18
PTCD3-220ENST00000627371 FXR1P51114 621 aaKnown RBP eCLIP22.41■■□□□ 1.18
PTCD3-220ENST00000627371 ZNF131P52739 623 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 RABGGTBP53611 331 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 AMHR2Q16671 573 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 PPP4R3CPQ6ZMV5 832 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 CRIPAKQ8N1N5 446 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 DDX12PQ92771 950 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 LRCH3Q96II8 777 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 PRIMPOLQ96LW4 560 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 CCDC113Q9H0I3 377 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 FZD8Q9H461 694 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 MAGEF1Q9HAY2 307 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 PRMT7Q9NVM4 692 aaPredicted RBP22.41■■□□□ 1.18
PTCD3-220ENST00000627371 KBTBD4Q9NVX7 518 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 LARSQ9P2J5 1176 aaKnown RBP22.41■■□□□ 1.18
PTCD3-220ENST00000627371 ARHGAP28Q9P2N2 729 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 KCNG1Q9UIX4 513 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 HPSEQ9Y251 543 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 PCDHA11Q9Y5I1 949 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 COL4A6Q14031 1691 aa22.41■■□□□ 1.18
PTCD3-220ENST00000627371 A0A1B0GVL5 298 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 CCDC169A6NNP5 214 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 TBCAO75347 108 aaKnown RBP22.4■■□□□ 1.18
PTCD3-220ENST00000627371 FAM13AO94988 1023 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 DNAJB2P25686 324 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 AXLP30530 894 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 HOXA11P31270 313 aaPredicted RBP22.4■■□□□ 1.18
PTCD3-220ENST00000627371 EFNA5P52803 228 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 FAM187BQ17R55 369 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 FAM117BQ6P1L5 589 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 NPAS4Q8IUM7 802 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 SPIRE2Q8WWL2 714 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 NTPCRQ9BSD7 190 aaKnown RBP22.4■■□□□ 1.18
PTCD3-220ENST00000627371 ZBED2Q9BTP6 218 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 TRAIPQ9BWF2 469 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 PARVGQ9HBI0 331 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 KMT5AQ9NQR1 393 aa22.4■■□□□ 1.18
PTCD3-220ENST00000627371 NLRC5Q86WI3 1866 aa22.39■■□□□ 1.18
PTCD3-220ENST00000627371 PHLPP2Q6ZVD8 1323 aa22.39■■□□□ 1.18
PTCD3-220ENST00000627371 TLL1O43897 1013 aa22.39■■□□□ 1.17
PTCD3-220ENST00000627371 UPP2O95045 317 aa22.39■■□□□ 1.17
PTCD3-220ENST00000627371 STAG3L1P0CL83 205 aa22.39■■□□□ 1.17
PTCD3-220ENST00000627371 FAM189BP81408 668 aa22.39■■□□□ 1.17
PTCD3-220ENST00000627371 HTRA4P83105 476 aaPredicted RBP22.39■■□□□ 1.17
PTCD3-220ENST00000627371 MAPK6Q16659 721 aa22.39■■□□□ 1.17
PTCD3-220ENST00000627371 TWF2Q6IBS0 349 aaKnown RBP22.39■■□□□ 1.17
PTCD3-220ENST00000627371 DYMQ7RTS9 669 aa22.39■■□□□ 1.17
PTCD3-220ENST00000627371 MRPS27Q92552 414 aaKnown RBP22.39■■□□□ 1.17
PTCD3-220ENST00000627371 DNAJC19Q96DA6 116 aa22.39■■□□□ 1.17
PTCD3-220ENST00000627371 LRRC27Q9C0I9 530 aa22.39■■□□□ 1.17
PTCD3-220ENST00000627371 RNF216Q9NWF9 866 aaPredicted RBP22.39■■□□□ 1.17
PTCD3-220ENST00000627371 MSRAQ9UJ68 235 aa22.39■■□□□ 1.17
PTCD3-220ENST00000627371 YBX2Q9Y2T7 364 aaKnown RBP22.39■■□□□ 1.17
PTCD3-220ENST00000627371 CNTNAP2Q9UHC6 1331 aa22.38■■□□□ 1.17
PTCD3-220ENST00000627371 A0A0U1RQF3 1178 aa22.38■■□□□ 1.17
PTCD3-220ENST00000627371 PRKCBP05771 671 aa22.38■■□□□ 1.17
PTCD3-220ENST00000627371 ARF4P18085 180 aaPredicted RBP22.38■■□□□ 1.17
PTCD3-220ENST00000627371 SMTNP53814 917 aa22.38■■□□□ 1.17
PTCD3-220ENST00000627371 NCBP1Q09161 790 aaKnown RBP22.38■■□□□ 1.17
PTCD3-220ENST00000627371 GPR153Q6NV75 609 aa22.38■■□□□ 1.17
PTCD3-220ENST00000627371 NOTUMQ6P988 496 aa22.38■■□□□ 1.17
PTCD3-220ENST00000627371 FSIP1Q8NA03 581 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms