RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ACTN4O43707 911 aaKnown RBP21.1■□□□□ 0.97
SQSTM1-216ENST00000626660 CSDE1O75534 798 aaKnown RBP21.1■□□□□ 0.97
SQSTM1-216ENST00000626660 KCNJ6P48051 423 aa21.1■□□□□ 0.97
SQSTM1-216ENST00000626660 PCBP1Q15365 356 aaKnown RBP eCLIP21.1■□□□□ 0.971e-6■□□□□ 8.3
SQSTM1-216ENST00000626660 SHHQ15465 462 aa21.1■□□□□ 0.97
SQSTM1-216ENST00000626660 MYCT1Q8N699 235 aa21.1■□□□□ 0.97
SQSTM1-216ENST00000626660 STAMQ92783 540 aa21.1■□□□□ 0.97
SQSTM1-216ENST00000626660 KMT5AQ9NQR1 393 aa21.1■□□□□ 0.97
SQSTM1-216ENST00000626660 PHLPP2Q6ZVD8 1323 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 ERLIN2O94905 339 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 ZNF202O95125 648 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 IDEP14735 1019 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 FGFR4P22455 802 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 NPTX2P47972 431 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 EFNA5P52803 228 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 FAM160A1Q05DH4 1040 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 NCBP1Q09161 790 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 LONRF3Q496Y0 759 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 C9orf50Q5SZB4 431 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 CDCA2Q69YH5 1023 aaPredicted RBP21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 TDHQ8IZJ6 230 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 SPIRE2Q8WWL2 714 aa21.09■□□□□ 0.97
SQSTM1-216ENST00000626660 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 DENND3A2RUS2 1198 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 H0YCG3 227 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 GOLGA6L22H0YM25 854 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 GADD45BO75293 160 aaPredicted RBP21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 PRPF40AO75400 957 aaKnown RBP21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 ZSCAN20P17040 1043 aaPredicted RBP21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 GAP43P17677 238 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 AFMP43652 599 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 ZNF131P52739 623 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 UBE2HP62256 183 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 ASIC1P78348 528 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 MBTD1Q05BQ5 628 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 TCTN1Q2MV58 587 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 KRBA2Q6ZNG9 492 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 CCDC65Q8IXS2 484 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 CNNM3Q8NE01 707 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 DNAJC19Q96DA6 116 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 TRIM9Q9C026 710 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 PRO3102Q9H379 93 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 MINDY3Q9H8M7 445 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 SLC4A7Q9Y6M7 1214 aa21.08■□□□□ 0.97
SQSTM1-216ENST00000626660 TRIOBPQ9H2D6 2365 aa21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 MAPK6Q16659 721 aa21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 KANK3Q6NY19 840 aa21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 FMR1NBQ8N0W7 255 aaPredicted RBP21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 PAGE5Q96GU1 130 aa21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 C7orf25Q9BPX7 421 aa21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 NTPCRQ9BSD7 190 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 KIFC3Q9BVG8 833 aa21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 CHST12Q9NRB3 414 aa21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 PRMT7Q9NVM4 692 aaPredicted RBP21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 SEL1LQ9UBV2 794 aa21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 PIN4Q9Y237 131 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-216ENST00000626660 A0A1W2PPC1 479 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 K7ERI5 159 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 DLL1O00548 723 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 SLC16A4O15374 487 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 AMHP03971 560 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 PRKCBP05771 671 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 LIG1P18858 919 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 SCP2P22307 547 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 WDR5P61964 334 aaKnown RBP21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 CNNM4Q6P4Q7 775 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 FAM178BQ8IXR5 827 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 PRIMPOLQ96LW4 560 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 ADAM2Q99965 735 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 TMX1Q9H3N1 280 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 PANK4Q9NVE7 773 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 CXXC1Q9P0U4 656 aaPredicted RBP21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 ARHGAP28Q9P2N2 729 aa21.06■□□□□ 0.96
SQSTM1-216ENST00000626660 ADGRA3Q8IWK6 1321 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 TRAK2O60296 914 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 MYL1P05976 194 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 AXLP30530 894 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 ABCD1P33897 745 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 FAM187BQ17R55 369 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 TMEM132AQ24JP5 1023 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 HERC4Q5GLZ8 1057 aaPredicted RBP21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 RASIP1Q5U651 963 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 PPP4R3CPQ6ZMV5 832 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 SFR1Q86XK3 245 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 GRAMD1CQ8IYS0 662 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 ENGASEQ8NFI3 743 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 TSPYL2Q9H2G4 693 aaPredicted RBP21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 BLZF1Q9H2G9 400 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 FZD8Q9H461 694 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 C1orf112Q9NSG2 853 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 AGPAT5Q9NUQ2 364 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 DACT1Q9NYF0 836 aa21.05■□□□□ 0.96
SQSTM1-216ENST00000626660 K7ENM7 598 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 ENPP3O14638 875 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 GTPBP6O43824 516 aaPredicted RBP21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 TSPAN1O60635 241 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 KINO60870 393 aaKnown RBP21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 NCKAP1LP55160 1127 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 STRN3Q13033 797 aa21.04■□□□□ 0.96
SQSTM1-216ENST00000626660 SNW1Q13573 536 aaKnown RBP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms