RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NPTX2P47972 431 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 GALCP54803 685 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 GHRHRQ02643 423 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 GABPB1Q06547 395 aaPredicted RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 C1orf220Q5T0J3 134 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 MEI1Q5TIA1 1274 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 ZNF746Q6NUN9 644 aaPredicted RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 EEPD1Q7L9B9 569 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 NSUN6Q8TEA1 469 aaKnown RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 SLC20A1Q8WUM9 679 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 STK33Q9BYT3 514 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 UBXN6Q9BZV1 441 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 TOPORSQ9NS56 1045 aaPredicted RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 APEX2Q9UBZ4 518 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 SEPT9Q9UHD8 586 aaPredicted RBP11.55□□□□□ -0.56
CUX1-221ENST00000622516 PCDHGC5Q9Y5F6 944 aa11.55□□□□□ -0.56
CUX1-221ENST00000622516 GTPBP10A4D1E9 387 aaKnown RBP11.54□□□□□ -0.56
CUX1-221ENST00000622516 TUBB4BP68371 445 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 TRADDQ15628 312 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 CATSPERGQ6ZRH7 1159 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 SEPT14Q6ZU15 432 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 XXYLT1Q8NBI6 393 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 LMO3Q8TAP4 145 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 SGIP1Q9BQI5 828 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 TMEM206Q9H813 350 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 TMOD4Q9NZQ9 345 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 BZW2Q9Y6E2 419 aaKnown RBP11.54□□□□□ -0.56
CUX1-221ENST00000622516 BRCA1P38398 1863 aaKnown RBP11.54□□□□□ -0.56
CUX1-221ENST00000622516 DNAH12Q6ZR08 3092 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 SPDYE16A6NNV3 312 aaPredicted RBP11.54□□□□□ -0.56
CUX1-221ENST00000622516 KCNA2P16389 499 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 PRLRP16471 622 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 PRKCIP41743 596 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 GTF2BQ00403 316 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 KRT76Q01546 638 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 CCNI2Q6ZMN8 369 aaPredicted RBP11.54□□□□□ -0.56
CUX1-221ENST00000622516 RPGRIP1Q96KN7 1286 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 TEX13BQ9BXU2 312 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 VPS18Q9P253 973 aa11.54□□□□□ -0.56
CUX1-221ENST00000622516 BRCA2P51587 3418 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 PFASO15067 1338 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 ADGRA3Q8IWK6 1321 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 IGSF9BQ9UPX0 1349 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 CALCAP01258 141 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 H2AFZP0C0S5 128 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 CNGA1P29973 690 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 JAK3P52333 1124 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 MTERF2Q49AM1 385 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 CFAP221Q4G0U5 840 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 TAF3Q5VWG9 929 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 MOB2Q70IA6 237 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 H2AFVQ71UI9 128 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 VPS36Q86VN1 386 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 APOBEC3FQ8IUX4 373 aaKnown RBP11.53□□□□□ -0.56
CUX1-221ENST00000622516 KLHL7Q8IXQ5 586 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 TXLNBQ8N3L3 684 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 TMEM161BQ8NDZ6 487 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 OLIG1Q8TAK6 271 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 GOLGA5Q8TBA6 731 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 JPH1Q9HDC5 661 aaPredicted RBP11.53□□□□□ -0.56
CUX1-221ENST00000622516 KMT5AQ9NQR1 393 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 TBX20Q9UMR3 447 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 CD2APQ9Y5K6 639 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 UBE4BO95155 1302 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 ADM5C9JUS6 153 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 USP2O75604 605 aaPredicted RBP11.53□□□□□ -0.56
CUX1-221ENST00000622516 DLATP10515 647 aaKnown RBP11.53□□□□□ -0.56
CUX1-221ENST00000622516 FERP16591 822 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 VGLL4Q14135 290 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 PPP2R5AQ15172 486 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 NFIL3Q16649 462 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 LMBRD2Q68DH5 695 aaPredicted RBP11.53□□□□□ -0.56
CUX1-221ENST00000622516 DAAM2Q86T65 1068 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 ANKRD35Q8N283 1001 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 INPP4AQ96PE3 977 aaPredicted RBP11.53□□□□□ -0.56
CUX1-221ENST00000622516 KRT12Q99456 494 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 SELENOOQ9BVL4 669 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 AP1M1Q9BXS5 423 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 TMEM117Q9H0C3 514 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 ACAD9Q9H845 621 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 MAP3K20Q9NYL2 800 aaKnown RBP11.53□□□□□ -0.56
CUX1-221ENST00000622516 AFG3L2Q9Y4W6 797 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 CEP350Q5VT06 3117 aa11.53□□□□□ -0.56
CUX1-221ENST00000622516 LYPLA2O95372 231 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 GLI1P08151 1106 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 ACTR2P61160 394 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 DMP1Q13316 513 aaPredicted RBP11.52□□□□□ -0.56
CUX1-221ENST00000622516 RPS6KA1Q15418 735 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 SNRNP35Q16560 246 aaKnown RBP11.52□□□□□ -0.56
CUX1-221ENST00000622516 C8orf74Q6P047 294 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 INTS8Q75QN2 995 aaKnown RBP11.52□□□□□ -0.56
CUX1-221ENST00000622516 SLC9A9Q8IVB4 645 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 TPCN2Q8NHX9 752 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 TMEM143Q96AN5 459 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 ARHGEF26Q96DR7 871 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 FBXL5Q9UKA1 691 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 FAN1Q9Y2M0 1017 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 RLFQ13129 1914 aa11.52□□□□□ -0.56
CUX1-221ENST00000622516 CEP104O60308 925 aa11.52□□□□□ -0.57
CUX1-221ENST00000622516 TNFAIP3P21580 790 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms