RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 MYMKA6NI61 221 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 SMIM23A6NLE4 172 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 TRAF5O00463 557 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 HSPA6P17066 643 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 ZCWPW2Q504Y3 356 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 NUGGCQ68CJ6 796 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 TRIM59Q8IWR1 403 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 FITM2Q8N6M3 262 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 ENDOVQ8N8Q3 282 aaKnown RBP11.66□□□□□ -0.54
UPF3A-212ENST00000619079 PROCA1Q8NCQ7 364 aaPredicted RBP11.66□□□□□ -0.54
UPF3A-212ENST00000619079 EZH1Q92800 747 aaPredicted RBP11.66□□□□□ -0.54
UPF3A-212ENST00000619079 GPKOWQ92917 476 aaPredicted RBP eCLIP11.66□□□□□ -0.54
UPF3A-212ENST00000619079 CDK5RAP3Q96JB5 506 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 GORASP1Q9BQQ3 440 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 CCDC113Q9H0I3 377 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 CARD9Q9H257 536 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 LRMDAQ9H2I8 198 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 ARHGEF10LQ9HCE6 1279 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 USP40Q9NVE5 1235 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.66□□□□□ -0.54
UPF3A-212ENST00000619079 CTTNBP2NLQ9P2B4 639 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 PRKAG3Q9UGI9 489 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 C2CD2Q9Y426 696 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 LMNAP02545 664 aaKnown RBP11.66□□□□□ -0.54
UPF3A-212ENST00000619079 HIBADHP31937 336 aaKnown RBP11.66□□□□□ -0.54
UPF3A-212ENST00000619079 PRKCIP41743 596 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 RAD23BP54727 409 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 PLTPP55058 493 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 SF3A3Q12874 501 aaKnown RBP eCLIP11.66□□□□□ -0.544e-6■■■■□ 22.2
UPF3A-212ENST00000619079 SETDB1Q15047 1291 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 ZC3H12AQ5D1E8 599 aaKnown RBP11.66□□□□□ -0.54
UPF3A-212ENST00000619079 IRGCQ6NXR0 463 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 KCNV2Q8TDN2 545 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 TMEM237Q96Q45 408 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 VPS33BQ9H267 617 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 GOLPH3Q9H4A6 298 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.66□□□□□ -0.54
UPF3A-212ENST00000619079 SH3BP1Q9Y3L3 701 aa11.66□□□□□ -0.54
UPF3A-212ENST00000619079 RPTORQ8N122 1335 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 PODXLO00592 558 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 ECE2O60344 883 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 GFPT2O94808 682 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 VEGFAP15692 232 aaPredicted RBP11.65□□□□□ -0.54
UPF3A-212ENST00000619079 PEX5P50542 639 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 BCAMP50895 628 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 PRELPP51888 382 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 MAPK7Q13164 816 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 AUHQ13825 339 aaKnown RBP11.65□□□□□ -0.54
UPF3A-212ENST00000619079 ENOX2Q16206 610 aaKnown RBP11.65□□□□□ -0.54
UPF3A-212ENST00000619079 WASHC2DQ5SRD0 308 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 ZNF571Q7Z3V5 609 aaPredicted RBP11.65□□□□□ -0.54
UPF3A-212ENST00000619079 ARHGAP22Q7Z5H3 698 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 IRF2BP2Q7Z5L9 587 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 JAMLQ86YT9 394 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 DNAJC9Q8WXX5 260 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 INPP5DQ92835 1189 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 MMTAG2Q9BU76 263 aaKnown RBP11.65□□□□□ -0.54
UPF3A-212ENST00000619079 RAB34Q9BZG1 259 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 GGT7Q9UJ14 662 aa11.65□□□□□ -0.54
UPF3A-212ENST00000619079 POTEFA5A3E0 1075 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 PDLIM1O00151 329 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 KIAA0391O15091 583 aaKnown RBP11.65□□□□□ -0.55
UPF3A-212ENST00000619079 CCNT1O60563 726 aaKnown RBP11.65□□□□□ -0.55
UPF3A-212ENST00000619079 POTEIP0CG38 1075 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 POTEJP0CG39 1038 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 TPBGLP0DKB5 382 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 RARGP13631 454 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 RASSF2P50749 326 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 NONOQ15233 471 aaKnown RBP eCLIP11.65□□□□□ -0.55
UPF3A-212ENST00000619079 TBC1D25Q3MII6 688 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 TMEM154Q6P9G4 183 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 POTEEQ6S8J3 1075 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 ZDHHC24Q6UX98 284 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 INTS8Q75QN2 995 aaKnown RBP11.65□□□□□ -0.55
UPF3A-212ENST00000619079 SESTD1Q86VW0 696 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 B4GALNT2Q8NHY0 566 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 FBXO25Q8TCJ0 367 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 ASAP3Q8TDY4 903 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 CKAP2Q8WWK9 683 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 FAM84BQ96KN1 310 aaPredicted RBP11.65□□□□□ -0.55
UPF3A-212ENST00000619079 COA1Q9GZY4 146 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 BLOC1S4Q9NUP1 217 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 BARHL2Q9NY43 387 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 SCOCQ9UIL1 159 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 PNMA3Q9UL41 463 aa11.65□□□□□ -0.55
UPF3A-212ENST00000619079 FER1L6Q2WGJ9 1857 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 CCDC88AQ3V6T2 1871 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 RNF8O76064 485 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 CHRNA3P32297 505 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 TECP42680 631 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 EIF6P56537 245 aaKnown RBP11.64□□□□□ -0.55
UPF3A-212ENST00000619079 ADAM9Q13443 819 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 PDIA5Q14554 519 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 ZRSR2Q15696 482 aaKnown RBP11.64□□□□□ -0.55
UPF3A-212ENST00000619079 TMEM266Q2M3C6 531 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 SAMD1Q6SPF0 538 aaPredicted RBP11.64□□□□□ -0.55
UPF3A-212ENST00000619079 DYMQ7RTS9 669 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 NEK8Q86SG6 692 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 FAM81AQ8TBF8 368 aa11.64□□□□□ -0.55
UPF3A-212ENST00000619079 EPS8L3Q8TE67 593 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms