RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 PEX3P56589 373 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 NFX1Q12986 1120 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 MAPK6Q16659 721 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 PPP4R3CPQ6ZMV5 832 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 FAM228AQ86W67 206 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 CCDC65Q8IXS2 484 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 ELOA2Q8IYF1 753 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 TDHQ8IZJ6 230 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 FMR1NBQ8N0W7 255 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 PHOSPHO2Q8TCD6 241 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 DNAJC19Q96DA6 116 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 CCDC51Q96ER9 411 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 TRAIPQ9BWF2 469 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 ST6GALNAC4Q9H4F1 302 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 TMEM134Q9H6X4 195 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 KMT5AQ9NQR1 393 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 OLFML3Q9NRN5 406 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 C1orf112Q9NSG2 853 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 DACT1Q9NYF0 836 aa18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 HOOK1Q9UJC3 728 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-219ENST00000599575 PVALEFA0A1B0GWK0 134 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 ERLIN2O94905 339 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 ACRP10323 421 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 ZSCAN20P17040 1043 aaPredicted RBP18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 MBTD1Q05BQ5 628 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 LONRF3Q496Y0 759 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 KRBA2Q6ZNG9 492 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 CATSPER4Q7RTX7 472 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 CNNM3Q8NE01 707 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 ENGASEQ8NFI3 743 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 BSNDQ8WZ55 320 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 PPP1R16BQ96T49 567 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 TSPYL2Q9H2G4 693 aaPredicted RBP18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 FZD8Q9H461 694 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 ARHGAP28Q9P2N2 729 aa18.27■□□□□ 0.52
SHKBP1-219ENST00000599575 CCDC169A6NNP5 214 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 INO80B-WBP1J3KQ70 363 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 K7ERI5 159 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 TRAK2O60296 914 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 SKIP12755 728 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 KCNJ6P48051 423 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 RAD51AP2Q09MP3 1159 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 ALCAMQ13740 583 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 CHRDL2Q6WN34 429 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 OTOP2Q7RTS6 562 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 MYCT1Q8N699 235 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 RSPH1Q8WYR4 309 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 PAGE5Q96GU1 130 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 RNPC3Q96LT9 517 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 SLC9A7Q96T83 725 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 GOLPH3LQ9H4A5 285 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 RGS18Q9NS28 235 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 AGPAT5Q9NUQ2 364 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 SERTAD1Q9UHV2 236 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 SLC4A7Q9Y6M7 1214 aa18.26■□□□□ 0.51
SHKBP1-219ENST00000599575 EVPLQ92817 2033 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 NPHP3-ACAD11A0A0J9YXS1 232 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 DENND3A2RUS2 1198 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 ACKR2O00590 384 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 AMHP03971 560 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 NCKAP1LP55160 1127 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 SNW1Q13573 536 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 SHHQ15465 462 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 SLC24A5Q71RS6 500 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 DYMQ7RTS9 669 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 FAM178BQ8IXR5 827 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 HVCN1Q96D96 273 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 CCDC113Q9H0I3 377 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 MINDY3Q9H8M7 445 aa18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 RANBP2P49792 3224 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-219ENST00000599575 TCHHQ07283 1943 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 SFI1A8K8P3 1242 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 ENPP3O14638 875 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 GTPBP6O43824 516 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 KINO60870 393 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 PRPF40AO75400 957 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 IDEP14735 1019 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 RAB27AP51159 221 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 WDR5P61964 334 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 STRN3Q13033 797 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 DSC3Q14574 896 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 HERC4Q5GLZ8 1057 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 NOTUMQ6P988 496 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 STXBP4Q6ZWJ1 553 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 UNC13DQ70J99 1090 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 APBB1IPQ7Z5R6 666 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 TMEM161BQ8NDZ6 487 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 CCDC47Q96A33 483 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 ZNF668Q96K58 619 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 GTPBP4Q9BZE4 634 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 OSBPL7Q9BZF2 842 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 TMX1Q9H3N1 280 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 ELAC1Q9H777 363 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 PANK4Q9NVE7 773 aa18.24■□□□□ 0.51
SHKBP1-219ENST00000599575 CNTNAP2Q9UHC6 1331 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 ZBBXA8MT70 800 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 TSPAN1O60635 241 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 ASIC1P78348 528 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 FAM189BP81408 668 aa18.23■□□□□ 0.51
SHKBP1-219ENST00000599575 PSMD2Q13200 908 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms