RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 RAB27AP51159 221 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 GRIN1Q05586 938 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 FAM102BQ5T8I3 360 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 FAM173BQ6P4H8 233 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 RSPH1Q8WYR4 309 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 BSNDQ8WZ55 320 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 PLVAPQ9BX97 442 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 NT5C3AQ9H0P0 336 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 MTUS1Q9ULD2 1270 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 CLIC4Q9Y696 253 aa17.9■□□□□ 0.46
TRIM28-213ENST00000598355 E9PMD0 336 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 TSPAN1O60635 241 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 FGFR1P11362 822 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 AXLP30530 894 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 BMPR1AP36894 532 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 CLLU1OSQ5K130 101 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 UBXN11Q5T124 520 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 PPP4R3CPQ6ZMV5 832 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 P2RX5Q93086 422 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 TMEM117Q9H0C3 514 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 FAM105AQ9NUU6 356 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 DNM3Q9UQ16 869 aa17.89■□□□□ 0.45
TRIM28-213ENST00000598355 SPTBN5Q9NRC6 3674 aaKnown RBP17.88■□□□□ 0.45
TRIM28-213ENST00000598355 GTPBP6O43824 516 aaPredicted RBP17.88■□□□□ 0.45
TRIM28-213ENST00000598355 SKIP12755 728 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 IGFBP4P22692 258 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 CTNNB1P35222 781 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 NAMPTP43490 491 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 NASPP49321 788 aaPredicted RBP17.88■□□□□ 0.45
TRIM28-213ENST00000598355 MAPK7Q13164 816 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 FAM187BQ17R55 369 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 PAN2Q504Q3 1202 aaKnown RBP17.88■□□□□ 0.45
TRIM28-213ENST00000598355 TWF2Q6IBS0 349 aaKnown RBP17.88■□□□□ 0.45
TRIM28-213ENST00000598355 C1orf186Q6ZWK4 172 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 DAW1Q8N136 415 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 LRRC15Q8TF66 581 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 KIFAP3Q92845 792 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 CCDC51Q96ER9 411 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 CASD1Q96PB1 797 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 USP28Q96RU2 1077 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 CCDC113Q9H0I3 377 aa17.88■□□□□ 0.45
TRIM28-213ENST00000598355 FBXO2Q9UK22 296 aaPredicted RBP17.88■□□□□ 0.45
TRIM28-213ENST00000598355 ERLIN2O94905 339 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 GUCY2CP25092 1073 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 SLC12A3P55017 1021 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 NAALADL2Q58DX5 795 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 RINT1Q6NUQ1 792 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 MAEAQ7L5Y9 396 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 MRPL10Q7Z7H8 261 aaKnown RBP17.87■□□□□ 0.45
TRIM28-213ENST00000598355 CABP7Q86V35 215 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 SYT2Q8N9I0 419 aaPredicted RBP17.87■□□□□ 0.45
TRIM28-213ENST00000598355 PRIMPOLQ96LW4 560 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 C11orf84Q9BUA3 381 aaPredicted RBP17.87■□□□□ 0.45
TRIM28-213ENST00000598355 RUSC1Q9BVN2 902 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 CCSER1Q9C0I3 900 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 FZD8Q9H461 694 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 CWH43Q9H720 699 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 SRPRBQ9Y5M8 271 aaKnown RBP17.87■□□□□ 0.45
TRIM28-213ENST00000598355 A0A0C4DFX4 3053 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 XIRP2A4UGR9 3374 aa17.87■□□□□ 0.45
TRIM28-213ENST00000598355 TCHHQ07283 1943 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 TRIP11Q15643 1979 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 LRRIQ4A6NIV6 560 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 TBKBP1A7MCY6 615 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 INO80B-WBP1J3KQ70 363 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 ARF4P18085 180 aaPredicted RBP17.86■□□□□ 0.45
TRIM28-213ENST00000598355 PPP2R5AQ15172 486 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 NOTUMQ6P988 496 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 LRRC43Q8N309 656 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 MRPL38Q96DV4 380 aaKnown RBP17.86■□□□□ 0.45
TRIM28-213ENST00000598355 TIPINQ9BVW5 301 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 LMAN2LQ9H0V9 348 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 C2orf40Q9H1Z8 148 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 KCND2Q9NZV8 630 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 HCSTQ9UBK5 93 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 CNTNAP2Q9UHC6 1331 aa17.86■□□□□ 0.45
TRIM28-213ENST00000598355 MEIS3P2A8K0S8 358 aa17.85■□□□□ 0.45
TRIM28-213ENST00000598355 INPPL1O15357 1258 aa17.85■□□□□ 0.45
TRIM28-213ENST00000598355 ZSCAN22P10073 491 aaPredicted RBP17.85■□□□□ 0.45
TRIM28-213ENST00000598355 GPM6BQ13491 265 aa17.85■□□□□ 0.45
TRIM28-213ENST00000598355 SLC39A14Q15043 492 aa17.85■□□□□ 0.45
TRIM28-213ENST00000598355 LRRC55Q6ZSA7 311 aa17.85■□□□□ 0.45
TRIM28-213ENST00000598355 C17orf75Q9HAS0 396 aa17.85■□□□□ 0.45
TRIM28-213ENST00000598355 BLOC1S4Q9NUP1 217 aa17.85■□□□□ 0.45
TRIM28-213ENST00000598355 PRMT7Q9NVM4 692 aaPredicted RBP17.85■□□□□ 0.45
TRIM28-213ENST00000598355 ZMYM2Q9UBW7 1377 aa17.85■□□□□ 0.45
TRIM28-213ENST00000598355 PCDHB2Q9Y5E7 798 aa17.85■□□□□ 0.45
TRIM28-213ENST00000598355 VCANP13611 3396 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 A0A1B0GUA9 196 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 B4GALT5O43286 388 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 HIP1RO75146 1068 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 F13A1P00488 732 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 EDN1P05305 212 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 HSP90AA1P07900 732 aaKnown RBP17.84■□□□□ 0.45
TRIM28-213ENST00000598355 NCLP19338 710 aaKnown RBP17.84■□□□□ 0.45
TRIM28-213ENST00000598355 UBA7P41226 1012 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 PKP1Q13835 747 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 CAMK1Q14012 370 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 AGMOQ6ZNB7 445 aa17.84■□□□□ 0.45
TRIM28-213ENST00000598355 ZBTB8OSQ8IWT0 167 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms