RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 FAM105AQ9NUU6 356 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 PUF60Q9UHX1 559 aaKnown RBP16.79■□□□□ 0.28
LIG1-215ENST00000597901 PCDHGC5Q9Y5F6 944 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 REV3LO60673 3130 aa16.79■□□□□ 0.28
LIG1-215ENST00000597901 MED24O75448 989 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 OR52Z1P0C646 297 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 COL9A1P20849 921 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 PTENP60484 403 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 POU5F1BQ06416 359 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 MRPL10Q7Z7H8 261 aaKnown RBP16.78■□□□□ 0.28
LIG1-215ENST00000597901 FAM178BQ8IXR5 827 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 MRPS27Q92552 414 aaKnown RBP16.78■□□□□ 0.28
LIG1-215ENST00000597901 TMX3Q96JJ7 454 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 ZNF558Q96NG5 402 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 NACC1Q96RE7 527 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 POLR3CQ9BUI4 534 aaPredicted RBP16.78■□□□□ 0.28
LIG1-215ENST00000597901 TLE6Q9H808 572 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 CD320Q9NPF0 282 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 TLR9Q9NR96 1032 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 AGPAT5Q9NUQ2 364 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 SPG21Q9NZD8 308 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 NOL7Q9UMY1 257 aaKnown RBP16.78■□□□□ 0.28
LIG1-215ENST00000597901 FAM50BQ9Y247 325 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 LZTS1Q9Y250 596 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 PCDHB2Q9Y5E7 798 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 TTC28Q96AY4 2481 aa16.78■□□□□ 0.28
LIG1-215ENST00000597901 OFD1O75665 1012 aa16.77■□□□□ 0.28
LIG1-215ENST00000597901 PBX3P40426 434 aa16.77■□□□□ 0.28
LIG1-215ENST00000597901 NRIP1P48552 1158 aa16.77■□□□□ 0.28
LIG1-215ENST00000597901 TOB1P50616 345 aaPredicted RBP16.77■□□□□ 0.28
LIG1-215ENST00000597901 RAB27AP51159 221 aa16.77■□□□□ 0.28
LIG1-215ENST00000597901 KRT17Q04695 432 aa16.77■□□□□ 0.28
LIG1-215ENST00000597901 TFDP1Q14186 410 aa16.77■□□□□ 0.28
LIG1-215ENST00000597901 UBXN11Q5T124 520 aa16.77■□□□□ 0.28
LIG1-215ENST00000597901 PDE12Q6L8Q7 609 aaKnown RBP16.77■□□□□ 0.28
LIG1-215ENST00000597901 EFHBQ8N7U6 833 aa16.77■□□□□ 0.28
LIG1-215ENST00000597901 ASAP3Q8TDY4 903 aa16.77■□□□□ 0.28
LIG1-215ENST00000597901 PGBD4Q96DM1 585 aa16.77■□□□□ 0.28
LIG1-215ENST00000597901 CCDC43Q96MW1 224 aaKnown RBP16.77■□□□□ 0.28
LIG1-215ENST00000597901 XIRP2A4UGR9 3374 aa16.77■□□□□ 0.27
LIG1-215ENST00000597901 MEIS3P2A8K0S8 358 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 FSCN2O14926 492 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 PER2O15055 1255 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 CD2BP2O95400 341 aaKnown RBP16.76■□□□□ 0.27
LIG1-215ENST00000597901 GLRA2P23416 452 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 RPA1P27694 616 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 ALDH7A1P49419 539 aaKnown RBP16.76■□□□□ 0.27
LIG1-215ENST00000597901 BCAR1P56945 870 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 NBR1Q14596 966 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 NOMO2Q5JPE7 1267 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 GLB1LQ6UWU2 654 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 IFNLR1Q8IU57 520 aaPredicted RBP16.76■□□□□ 0.27
LIG1-215ENST00000597901 SLC39A11Q8N1S5 342 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 ERMNQ8TAM6 284 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 MRPL9Q9BYD2 267 aaKnown RBP16.76■□□□□ 0.27
LIG1-215ENST00000597901 DBR1Q9UK59 544 aaKnown RBP16.76■□□□□ 0.27
LIG1-215ENST00000597901 WDR81Q562E7 1941 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 RALGAPA2Q2PPJ7 1873 aa16.76■□□□□ 0.27
LIG1-215ENST00000597901 TCF20Q9UGU0 1960 aaKnown RBP16.75■□□□□ 0.27
LIG1-215ENST00000597901 NT5C1B-RDH14C9J2C7 533 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 PPM1AP35813 382 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 FXR2P51116 673 aaKnown RBP eCLIP16.75■□□□□ 0.271e-6■■■■□ 25.2
LIG1-215ENST00000597901 NCBP1Q09161 790 aaKnown RBP16.75■□□□□ 0.27
LIG1-215ENST00000597901 PTGDRQ13258 359 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 CAPSQ13938 189 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 PDIA5Q14554 519 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 PCBP1Q15365 356 aaKnown RBP eCLIP16.75■□□□□ 0.27
LIG1-215ENST00000597901 CLUL1Q15846 466 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 AGMOQ6ZNB7 445 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 MAEAQ7L5Y9 396 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 GJD3Q8N144 294 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 RSPH1Q8WYR4 309 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 CLEC1BQ9P126 229 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 KIF3AQ9Y496 699 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 PCDHB6Q9Y5E3 794 aa16.75■□□□□ 0.27
LIG1-215ENST00000597901 INO80B-WBP1J3KQ70 363 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 MBTPS2O43462 519 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 TSPAN1O60635 241 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 USO1O60763 962 aaKnown RBP16.74■□□□□ 0.27
LIG1-215ENST00000597901 TBX10O75333 385 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 ERLIN2O94905 339 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 AXLP30530 894 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 SSTR3P32745 418 aaPredicted RBP16.74■□□□□ 0.27
LIG1-215ENST00000597901 MCM2P49736 904 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 NDUFV1P49821 464 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 DUSP6Q16828 381 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 CNNM3Q8NE01 707 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 MSLNLQ96KJ4 702 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 TCF25Q9BQ70 676 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 NFKBIZQ9BYH8 718 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 POLR3FQ9H1D9 316 aaPredicted RBP16.74■□□□□ 0.27
LIG1-215ENST00000597901 EPHX3Q9H6B9 360 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 NRDE2Q9H7Z3 1164 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 NGRNQ9NPE2 291 aaKnown RBP16.74■□□□□ 0.27
LIG1-215ENST00000597901 GPRC5CQ9NQ84 441 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 TBC1D13Q9NVG8 400 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 LRWD1Q9UFC0 647 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 CD207Q9UJ71 328 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 INPP5FQ9Y2H2 1132 aa16.74■□□□□ 0.27
LIG1-215ENST00000597901 MYO7AQ13402 2215 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms