RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 MORC2Q9Y6X9 1032 aaPredicted RBP12.37□□□□□ -0.43
VRK3-210ENST00000596121 ADGRA3Q8IWK6 1321 aa12.37□□□□□ -0.43
VRK3-210ENST00000596121 PRUNE2Q8WUY3 3088 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 NPHP3-ACAD11A0A0J9YXS1 232 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 SFI1A8K8P3 1242 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 TSPAN1O60635 241 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 BRD1O95696 1058 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 PLA2G4BP0C869 781 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 STAG3L1P0CL83 205 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 FOSL2P15408 326 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 ZSCAN20P17040 1043 aaPredicted RBP12.36□□□□□ -0.43
VRK3-210ENST00000596121 UBA7P41226 1012 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 PHKA2P46019 1235 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 LONRF3Q496Y0 759 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 ARSHQ5FYA8 562 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 CLLU1OSQ5K130 101 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 CDCA2Q69YH5 1023 aaPredicted RBP12.36□□□□□ -0.43
VRK3-210ENST00000596121 LRRC55Q6ZSA7 311 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 FAM43BQ6ZT52 329 aaPredicted RBP12.36□□□□□ -0.43
VRK3-210ENST00000596121 SYT2Q8N9I0 419 aaPredicted RBP12.36□□□□□ -0.43
VRK3-210ENST00000596121 GDPD5Q8WTR4 605 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 SYMPKQ92797 1274 aaKnown RBP12.36□□□□□ -0.43
VRK3-210ENST00000596121 LPPQ93052 612 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 CPB2Q96IY4 423 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 KIFC3Q9BVG8 833 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 TRAIPQ9BWF2 469 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 NFKBIZQ9BYH8 718 aa12.36□□□□□ -0.43
VRK3-210ENST00000596121 INO80BQ9C086 356 aaPredicted RBP12.36□□□□□ -0.43
VRK3-210ENST00000596121 ELAC1Q9H777 363 aaKnown RBP12.36□□□□□ -0.43
VRK3-210ENST00000596121 DAXXQ9UER7 740 aaPredicted RBP12.36□□□□□ -0.43
VRK3-210ENST00000596121 PRRC2BQ5JSZ5 2229 aaKnown RBP12.35□□□□□ -0.43
VRK3-210ENST00000596121 A0A087X0B3 334 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 LRRIQ4A6NIV6 560 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 TBKBP1A7MCY6 615 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 INO80B-WBP1J3KQ70 363 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 HIP1RO75146 1068 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 PLCG1P19174 1290 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 RAD51AP2Q09MP3 1159 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 TFDP1Q14186 410 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 BTG3Q14201 252 aaPredicted RBP12.35□□□□□ -0.43
VRK3-210ENST00000596121 EPC2Q52LR7 807 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 CDR2LQ86X02 465 aaPredicted RBP12.35□□□□□ -0.43
VRK3-210ENST00000596121 TMEM192Q8IY95 271 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 CMTR2Q8IYT2 770 aaKnown RBP12.35□□□□□ -0.43
VRK3-210ENST00000596121 FIBCD1Q8N539 461 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 RNF169Q8NCN4 708 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 CLP1Q92989 425 aaKnown RBP12.35□□□□□ -0.43
VRK3-210ENST00000596121 CASD1Q96PB1 797 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 EIF2AQ9BY44 585 aaKnown RBP12.35□□□□□ -0.43
VRK3-210ENST00000596121 CCSER1Q9C0I3 900 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 CCDC113Q9H0I3 377 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 FZD8Q9H461 694 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 LRFN2Q9ULH4 789 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 MTCH2Q9Y6C9 303 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 REV3LO60673 3130 aa12.35□□□□□ -0.43
VRK3-210ENST00000596121 SLC26A4O43511 780 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 ZNF623O75123 536 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 SSBP05455 408 aaKnown RBP eCLIP12.34□□□□□ -0.43
VRK3-210ENST00000596121 ARF4P18085 180 aaPredicted RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 POU3F3P20264 500 aaPredicted RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 IGFBP4P22692 258 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 GUCY2CP25092 1073 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 BMPR1AP36894 532 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 AFF1P51825 1210 aaKnown RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 CACNB1Q02641 598 aaPredicted RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 DNM1Q05193 864 aaKnown RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 MCM6Q14566 821 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 NAALADL2Q58DX5 795 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 TWF2Q6IBS0 349 aaKnown RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 TAS1R3Q7RTX0 852 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 MRPL10Q7Z7H8 261 aaKnown RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 SMG8Q8ND04 991 aaKnown RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 MAFAQ8NHW3 353 aaPredicted RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 RAD54LQ92698 747 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 CDK5RAP3Q96JB5 506 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 ZNF396Q96N95 335 aaPredicted RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 NT5C3AQ9H0P0 336 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 RNF39Q9H2S5 420 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 CWH43Q9H720 699 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 FAM105AQ9NUU6 356 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 PCDHB2Q9Y5E7 798 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 MYO7AQ13402 2215 aa12.34□□□□□ -0.43
VRK3-210ENST00000596121 FNDC1Q4ZHG4 1894 aaPredicted RBP12.34□□□□□ -0.43
VRK3-210ENST00000596121 SPTLC2O15270 562 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 EOMESO95936 686 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 NAMPTP43490 491 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 NPTX2P47972 431 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 DHX8Q14562 1220 aaKnown RBP12.33□□□□□ -0.44
VRK3-210ENST00000596121 STK38Q15208 465 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 FAM187BQ17R55 369 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 AXDND1Q5T1B0 1012 aaPredicted RBP12.33□□□□□ -0.44
VRK3-210ENST00000596121 NT5DC1Q5TFE4 455 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 PPP4R3CPQ6ZMV5 832 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 AGMOQ6ZNB7 445 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 KCTD17Q8N5Z5 321 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 KRI1Q8N9T8 703 aaKnown RBP12.33□□□□□ -0.44
VRK3-210ENST00000596121 FBXO22Q8NEZ5 403 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 HELQQ8TDG4 1101 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 KIFAP3Q92845 792 aa12.33□□□□□ -0.44
VRK3-210ENST00000596121 CALML4Q96GE6 196 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms