RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 TMX1Q9H3N1 280 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 KCNG1Q9UIX4 513 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 LZTS1Q9Y250 596 aa11.71□□□□□ -0.53
LIG3-212ENST00000590181 FNDC1Q4ZHG4 1894 aaPredicted RBP11.71□□□□□ -0.53
LIG3-212ENST00000590181 MYO15AQ9UKN7 3530 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 PDIA4P13667 645 aaKnown RBP11.7□□□□□ -0.54
LIG3-212ENST00000590181 LAG3P18627 525 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 RPA1P27694 616 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 PPM1AP35813 382 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 PRPHP41219 470 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 TXKP42681 527 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 RILPL1Q5EBL4 403 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 XKR9Q5GH70 373 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 NCAPH2Q6IBW4 605 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 ABI1Q8IZP0 508 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 LRRC71Q8N4P6 559 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 MCPH1Q8NEM0 835 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 PGBD4Q96DM1 585 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 CCDC51Q96ER9 411 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 TBC1D32Q96NH3 1257 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 CDHR5Q9HBB8 845 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 UBN1Q9NPG3 1134 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 GJB4Q9NTQ9 266 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 PUF60Q9UHX1 559 aaKnown RBP11.7□□□□□ -0.54
LIG3-212ENST00000590181 DBR1Q9UK59 544 aaKnown RBP11.7□□□□□ -0.54
LIG3-212ENST00000590181 COL4A3BPQ9Y5P4 624 aa11.7□□□□□ -0.54
LIG3-212ENST00000590181 WDR87Q6ZQQ6 2873 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 SLC26A4O43511 780 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 OR52Z1P0C646 297 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 PDCP20941 246 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 PHKA2P46019 1235 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 FXR2P51116 673 aaKnown RBP eCLIP11.69□□□□□ -0.54
LIG3-212ENST00000590181 EARS2Q5JPH6 523 aaKnown RBP11.69□□□□□ -0.54
LIG3-212ENST00000590181 TRIM67Q6ZTA4 783 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 IFNLR1Q8IU57 520 aaPredicted RBP11.69□□□□□ -0.54
LIG3-212ENST00000590181 RHPN2Q8IUC4 686 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 LINC01599Q8WXQ3 324 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 GJA10Q969M2 543 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 PBXIP1Q96AQ6 731 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 ZBTB10Q96DT7 871 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 MSLNLQ96KJ4 702 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 MTRQ99707 1265 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 ALG13Q9NP73 1137 aaKnown RBP11.69□□□□□ -0.54
LIG3-212ENST00000590181 KANSL3Q9P2N6 904 aa11.69□□□□□ -0.54
LIG3-212ENST00000590181 PHLPP2Q6ZVD8 1323 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 CNTNAP2Q9UHC6 1331 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 BMP15O95972 392 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 MCM7P33993 719 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 PLCB3Q01970 1234 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 KRT17Q04695 432 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 LAMTOR4Q0VGL1 99 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 ST3GAL1Q11201 340 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 ADAM15Q13444 863 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 EMC2Q15006 297 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 TTC38Q5R3I4 469 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 IER5LQ5T953 404 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 BMP8AQ7Z5Y6 402 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 ADGRD2Q7Z7M1 963 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 FERMT3Q86UX7 667 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 ECHDC2Q86YB7 292 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 LRRC43Q8N309 656 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 SMRP1Q8NCR6 262 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 PRPF31Q8WWY3 499 aaKnown RBP11.68□□□□□ -0.54
LIG3-212ENST00000590181 DYDC2Q96IM9 177 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 TMX3Q96JJ7 454 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 PRRX2Q99811 253 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 IFT122Q9HBG6 1241 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 FAM86C1Q9NVL1 165 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 RGL1Q9NZL6 768 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 BARX2Q9UMQ3 279 aaPredicted RBP11.68□□□□□ -0.54
LIG3-212ENST00000590181 PLAGL2Q9UPG8 496 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 MRPL42Q9Y6G3 142 aaKnown RBP11.68□□□□□ -0.54
LIG3-212ENST00000590181 VPS13AQ96RL7 3174 aa11.68□□□□□ -0.54
LIG3-212ENST00000590181 ZMYM2Q9UBW7 1377 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 A0A087WZ62 844 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 LOC730098B7Z3J9 87 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 EYA4O95677 639 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 NPEPPSP55786 919 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 ZXDAP98168 799 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 TCF15Q12870 199 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 CAMK1Q14012 370 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 PAN2Q504Q3 1202 aaKnown RBP11.67□□□□□ -0.54
LIG3-212ENST00000590181 ARL6IP4Q66PJ3 421 aaKnown RBP11.67□□□□□ -0.54
LIG3-212ENST00000590181 CATSPER4Q7RTX7 472 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 HACE1Q8IYU2 909 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 FBXL6Q8N531 539 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 EFHBQ8N7U6 833 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 PRIMPOLQ96LW4 560 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 CDCA3Q99618 268 aaPredicted RBP11.67□□□□□ -0.54
LIG3-212ENST00000590181 FDXACB1Q9BRP7 624 aaPredicted RBP11.67□□□□□ -0.54
LIG3-212ENST00000590181 NGRNQ9NPE2 291 aaKnown RBP11.67□□□□□ -0.54
LIG3-212ENST00000590181 CLEC1BQ9P126 229 aa11.67□□□□□ -0.54
LIG3-212ENST00000590181 USP15Q9Y4E8 981 aaPredicted RBP11.67□□□□□ -0.54
LIG3-212ENST00000590181 ARID2Q68CP9 1835 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 TBKBP1A7MCY6 615 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 H3BQV1 296 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 MGEA5O60502 916 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 GFRA3O60609 400 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 ERLIN2O94905 339 aa11.66□□□□□ -0.54
LIG3-212ENST00000590181 GLP2RO95838 553 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms