RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 PDIA5Q14554 519 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 LY6KQ17RY6 165 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 SKOR2Q2VWA4 1001 aaPredicted RBP5.94□□□□□ -1.46
LIG3-210ENST00000588109 ELOA3BQ3SY89 546 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 PRAMEF19Q5SWL8 479 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 AXDND1Q5T1B0 1012 aaPredicted RBP5.94□□□□□ -1.46
LIG3-210ENST00000588109 USP49Q70CQ1 688 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 CYFIP1Q7L576 1253 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 OTOP1Q7RTM1 612 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 MIER3Q7Z3K6 550 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 CABP7Q86V35 215 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 DHX37Q8IY37 1157 aaKnown RBP5.94□□□□□ -1.46
LIG3-210ENST00000588109 PDILTQ8N807 584 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 IGSF22Q8N9C0 903 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 ELOA3Q8NG57 546 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 GPR152Q8TDT2 470 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 TRIB2Q92519 343 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 EPSTI1Q96J88 318 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 BTBD6Q96KE9 485 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 PYM1Q9BRP8 204 aaKnown RBP5.94□□□□□ -1.46
LIG3-210ENST00000588109 PANK2Q9BZ23 570 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 UBE2OQ9C0C9 1292 aaKnown RBP5.94□□□□□ -1.46
LIG3-210ENST00000588109 UNC45AQ9H3U1 944 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 MLXIPQ9HAP2 919 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 PDGFCQ9NRA1 345 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 FLRT1Q9NZU1 646 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 KLF15Q9UIH9 416 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 DDX41Q9UJV9 622 aaKnown RBP5.94□□□□□ -1.46
LIG3-210ENST00000588109 VAV3Q9UKW4 847 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 HCN2Q9UL51 889 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 KCNH3Q9ULD8 1083 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 NFASCO94856 1347 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 KDM3AQ9Y4C1 1321 aa5.94□□□□□ -1.46
LIG3-210ENST00000588109 KIAA1217Q5T5P2 1943 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 MCM3APO60318 1980 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 SHISA8B8ZZ34 492 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 POLR2DO15514 142 aaKnown RBP5.93□□□□□ -1.46
LIG3-210ENST00000588109 DHX15O43143 795 aaKnown RBP5.93□□□□□ -1.46
LIG3-210ENST00000588109 ADCY3O60266 1144 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 FARP2O94887 1054 aaPredicted RBP5.93□□□□□ -1.46
LIG3-210ENST00000588109 ARIH2O95376 493 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 GH1P01241 217 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 HMGCRP04035 888 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 PSAPP07602 524 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 RARAP10276 462 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 LIG1P18858 919 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 TARSP26639 723 aaKnown RBP5.93□□□□□ -1.46
LIG3-210ENST00000588109 SFNP31947 248 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 STAT6P42226 847 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 SYKP43405 635 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 NDUFA8P51970 172 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 CAP1Q01518 475 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 SP2Q02086 613 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 CYP4A11Q02928 519 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 TNFAIP2Q03169 654 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 FAM160A1Q05DH4 1040 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 SPIRE1Q08AE8 756 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 KARSQ15046 597 aaKnown RBP5.93□□□□□ -1.46
LIG3-210ENST00000588109 CCDC144BQ3MJ40 725 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 CELF3Q5SZQ8 465 aaKnown RBP5.93□□□□□ -1.46
LIG3-210ENST00000588109 RRAGBQ5VZM2 374 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 IQSEC1Q6DN90 963 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 PHLDB3Q6NSJ2 640 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 ZNF746Q6NUN9 644 aaPredicted RBP5.93□□□□□ -1.46
LIG3-210ENST00000588109 TAPT1Q6NXT6 567 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 MIS18BP1Q6P0N0 1132 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 METTL7BQ6UX53 244 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 SMAP1Q8IYB5 467 aaPredicted RBP5.93□□□□□ -1.46
LIG3-210ENST00000588109 CEP57L1Q8IYX8 460 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 GPT2Q8TD30 523 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 SYAP1Q96A49 352 aaPredicted RBP5.93□□□□□ -1.46
LIG3-210ENST00000588109 DHX58Q96C10 678 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 CCDC34Q96HJ3 373 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 CCDC43Q96MW1 224 aaKnown RBP5.93□□□□□ -1.46
LIG3-210ENST00000588109 SPATA33Q96N06 139 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 PLIN2Q99541 437 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 SENP7Q9BQF6 1050 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 CCSER1Q9C0I3 900 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 KATNBL1Q9H079 304 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 GOLPH3LQ9H4A5 285 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 DISC1Q9NRI5 854 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 SLC9A2Q9UBY0 812 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 FAM184BQ9ULE4 1060 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 MKL2Q9ULH7 1088 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 CASP8AP2Q9UKL3 1982 aa5.93□□□□□ -1.46
LIG3-210ENST00000588109 DOCK3Q8IZD9 2030 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 RBM47A0AV96 593 aaKnown RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 ADARB2-AS1A8MUL3 147 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 NKRFO15226 690 aaKnown RBP eCLIP5.92□□□□□ -1.46
LIG3-210ENST00000588109 FOXN1O15353 648 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 SLC26A4O43511 780 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 DKC1O60832 514 aaKnown RBP eCLIP5.92□□□□□ -1.46
LIG3-210ENST00000588109 ZNF202O95125 648 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 CCNE2O96020 404 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 ZNF865P0CJ78 1059 aaPredicted RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 HSPA1AP0DMV8 641 aaKnown RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 HSPA1BP0DMV9 641 aaKnown RBP5.92□□□□□ -1.46
LIG3-210ENST00000588109 AKR1A1P14550 325 aa5.92□□□□□ -1.46
LIG3-210ENST00000588109 PLCG1P19174 1290 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms