RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 C2orf16Q68DN1 1984 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 NT5C1B-RDH14C9J2C7 533 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 DKC1O60832 514 aaKnown RBP eCLIP13.31□□□□□ -0.28
LIG3-209ENST00000586435 ZC3H11AO75152 810 aaKnown RBP eCLIP13.31□□□□□ -0.28
LIG3-209ENST00000586435 GCFC2P16383 781 aaKnown RBP13.31□□□□□ -0.28
LIG3-209ENST00000586435 NOMO2Q5JPE7 1267 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 KIAA1841Q6NSI8 718 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 CATSPER4Q7RTX7 472 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 TMEM173Q86WV6 379 aaPredicted RBP13.31□□□□□ -0.28
LIG3-209ENST00000586435 EXOC8Q8IYI6 725 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 UBALD2Q8IYN6 164 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 VPS52Q8N1B4 723 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 RIPOR3Q96MK2 946 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 FAM20AQ96MK3 541 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 SH2D3AQ9BRG2 576 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 APOL5Q9BWW9 433 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 NRDE2Q9H7Z3 1164 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 IFT122Q9HBG6 1241 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 KCNMB3Q9NPA1 279 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 CYP26B1Q9NR63 512 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 AGPAT5Q9NUQ2 364 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 STK39Q9UEW8 545 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 VAV3Q9UKW4 847 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 SORCS3Q9UPU3 1222 aa13.31□□□□□ -0.28
LIG3-209ENST00000586435 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.3□□□□□ -0.28
LIG3-209ENST00000586435 DDX11L8A8MPP1 907 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 C2CD4DB7Z1M9 353 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 EML1O00423 815 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 TBX3O15119 743 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 SLC37A4O43826 429 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 OFD1O75665 1012 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 CXCL14O95715 111 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 GALTP07902 379 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 QARSP47897 775 aaKnown RBP13.3□□□□□ -0.28
LIG3-209ENST00000586435 VCPP55072 806 aaKnown RBP13.3□□□□□ -0.28
LIG3-209ENST00000586435 MTMR3Q13615 1198 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 INF2Q27J81 1249 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 PPP4R3AQ6IN85 833 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 ZBTB33Q86T24 672 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 SLC7A3Q8WY07 619 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 LPPQ93052 612 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 PGBD4Q96DM1 585 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 NLRP4Q96MN2 994 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 AIFM3Q96NN9 605 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 IRF2BPLQ9H1B7 796 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 DHX33Q9H6R0 707 aaKnown RBP13.3□□□□□ -0.28
LIG3-209ENST00000586435 CDH22Q9UJ99 828 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 USTQ9Y2C2 406 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 COL4A3BPQ9Y5P4 624 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 TDRD15B5MCY1 1934 aaKnown RBP13.3□□□□□ -0.28
LIG3-209ENST00000586435 CNTNAP2Q9UHC6 1331 aa13.3□□□□□ -0.28
LIG3-209ENST00000586435 MEIS3P2A8K0S8 358 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 GAS2O43903 313 aaKnown RBP13.29□□□□□ -0.28
LIG3-209ENST00000586435 CDKL5O76039 1030 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 P4HBP07237 508 aaKnown RBP13.29□□□□□ -0.28
LIG3-209ENST00000586435 SP100P23497 879 aaPredicted RBP13.29□□□□□ -0.28
LIG3-209ENST00000586435 AVPR2P30518 371 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 RFC5P40937 340 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 RNASELQ05823 741 aaKnown RBP13.29□□□□□ -0.28
LIG3-209ENST00000586435 PLA2G4FQ68DD2 849 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 SRGAP1Q7Z6B7 1085 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 MRPL10Q7Z7H8 261 aaKnown RBP13.29□□□□□ -0.28
LIG3-209ENST00000586435 NEK8Q86SG6 692 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 PPFIBP1Q86W92 1011 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 KSR1Q8IVT5 923 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 ZDHHC14Q8IZN3 488 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 KREMEN2Q8NCW0 462 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 SLC22A17Q8WUG5 538 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 BCL7CQ8WUZ0 217 aaPredicted RBP13.29□□□□□ -0.28
LIG3-209ENST00000586435 PHOX2BQ99453 314 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 NAP1L4Q99733 375 aaKnown RBP13.29□□□□□ -0.28
LIG3-209ENST00000586435 PHF20Q9BVI0 1012 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 TSHZ2Q9NRE2 1034 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 PCDHB2Q9Y5E7 798 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 STK36Q9NRP7 1315 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 PLXNA3P51805 1871 aa13.29□□□□□ -0.28
LIG3-209ENST00000586435 CCDC194A0A1B0GVG4 234 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 EPCAMP16422 314 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 CA8P35219 290 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 SLC11A1P49279 550 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 NPEPPSP55786 919 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 PCBP1Q15365 356 aaKnown RBP eCLIP13.28□□□□□ -0.28
LIG3-209ENST00000586435 PTPN14Q15678 1187 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 LETM2Q2VYF4 491 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 ATAT1Q5SQI0 421 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 RARS2Q5T160 578 aaKnown RBP13.28□□□□□ -0.28
LIG3-209ENST00000586435 AGMOQ6ZNB7 445 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 C4orf19Q8IY42 314 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 PLCD3Q8N3E9 789 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 TDRD5Q8NAT2 981 aaKnown RBP13.28□□□□□ -0.28
LIG3-209ENST00000586435 TMEM87AQ8NBN3 555 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 URGCPQ8TCY9 931 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 PSPC1Q8WXF1 523 aaKnown RBP13.28□□□□□ -0.28
LIG3-209ENST00000586435 AUTS2Q8WXX7 1259 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 TMEM175Q9BSA9 504 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 VN1R3Q9BXE9 311 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 SFXN1Q9H9B4 322 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 RSAD1Q9HA92 442 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 DNAJB4Q9UDY4 337 aa13.28□□□□□ -0.28
LIG3-209ENST00000586435 INPP5FQ9Y2H2 1132 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms