RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 IRAK3Q9Y616 596 aa11.9□□□□□ -0.5
RFFL-209ENST00000581265 WDFY4Q6ZS81 3184 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 KMT2EQ8IZD2 1858 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 NT5C1B-RDH14C9J2C7 533 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 EML1O00423 815 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 CXCL14O95715 111 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 QARSP47897 775 aaKnown RBP11.89□□□□□ -0.51
RFFL-209ENST00000581265 POLGP54098 1239 aaPredicted RBP11.89□□□□□ -0.51
RFFL-209ENST00000581265 PPP2R5CQ13362 524 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 INF2Q27J81 1249 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 TWF2Q6IBS0 349 aaKnown RBP11.89□□□□□ -0.51
RFFL-209ENST00000581265 PPP4R3AQ6IN85 833 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 CES5AQ6NT32 575 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 GLB1LQ6UWU2 654 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 KRT25Q7Z3Z0 450 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 DDX53Q86TM3 631 aaKnown RBP11.89□□□□□ -0.51
RFFL-209ENST00000581265 RHPN2Q8IUC4 686 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 KCNG4Q8TDN1 519 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 TMEM169Q96HH4 297 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 FAM20AQ96MK3 541 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 AIFM3Q96NN9 605 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 NECTIN4Q96NY8 510 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 IFT122Q9HBG6 1241 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 KCNMB3Q9NPA1 279 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 CYP26B1Q9NR63 512 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 FAM105AQ9NUU6 356 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 NR2E1Q9Y466 385 aa11.89□□□□□ -0.51
RFFL-209ENST00000581265 MED19A0JLT2 244 aaPredicted RBP11.88□□□□□ -0.51
RFFL-209ENST00000581265 SLC37A4O43826 429 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 DKC1O60832 514 aaKnown RBP eCLIP11.88□□□□□ -0.51
RFFL-209ENST00000581265 OFD1O75665 1012 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 PDGFBP01127 241 aaPredicted RBP11.88□□□□□ -0.51
RFFL-209ENST00000581265 GALTP07902 379 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 RAB27AP51159 221 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 GIT2Q14161 759 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 LETM2Q2VYF4 491 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 NOMO2Q5JPE7 1267 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 CATSPER4Q7RTX7 472 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 MRPL10Q7Z7H8 261 aaKnown RBP11.88□□□□□ -0.51
RFFL-209ENST00000581265 TMEM173Q86WV6 379 aaPredicted RBP11.88□□□□□ -0.51
RFFL-209ENST00000581265 KSR1Q8IVT5 923 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 EXOC8Q8IYI6 725 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 VPS52Q8N1B4 723 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 LPPQ93052 612 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 IGSF21Q96ID5 467 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 LARP6Q9BRS8 491 aaKnown RBP11.88□□□□□ -0.51
RFFL-209ENST00000581265 PHF20Q9BVI0 1012 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 APOL5Q9BWW9 433 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 ZBP1Q9H171 429 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 MFSD1Q9H3U5 465 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 NRDE2Q9H7Z3 1164 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 TBC1D13Q9NVG8 400 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 VAV3Q9UKW4 847 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 KCNJ14Q9UNX9 436 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 PIN4Q9Y237 131 aaKnown RBP11.88□□□□□ -0.51
RFFL-209ENST00000581265 PPME1Q9Y570 386 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 MYO10Q9HD67 2058 aa11.88□□□□□ -0.51
RFFL-209ENST00000581265 MEIS3P2A8K0S8 358 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 TBX3O15119 743 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 ZC3H11AO75152 810 aaKnown RBP eCLIP11.87□□□□□ -0.51
RFFL-209ENST00000581265 P4HBP07237 508 aaKnown RBP11.87□□□□□ -0.51
RFFL-209ENST00000581265 CTSAP10619 480 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 GCFC2P16383 781 aaKnown RBP11.87□□□□□ -0.51
RFFL-209ENST00000581265 MTHFRP42898 656 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 NPEPPSP55786 919 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 STK3Q13188 491 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 SRGAP1Q7Z6B7 1085 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 NEK8Q86SG6 692 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 C4orf19Q8IY42 314 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 ZNF579Q8NAF0 562 aaKnown RBP11.87□□□□□ -0.51
RFFL-209ENST00000581265 SLC22A17Q8WUG5 538 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 PRPF31Q8WWY3 499 aaKnown RBP11.87□□□□□ -0.51
RFFL-209ENST00000581265 SLC7A3Q8WY07 619 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 PGBD4Q96DM1 585 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 NLRP4Q96MN2 994 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 POMKQ9H5K3 350 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 DHX33Q9H6R0 707 aaKnown RBP11.87□□□□□ -0.51
RFFL-209ENST00000581265 PDRG1Q9NUG6 133 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 AGPAT5Q9NUQ2 364 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 CDH22Q9UJ99 828 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 PCDHB2Q9Y5E7 798 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 COL4A3BPQ9Y5P4 624 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 PTPRZ1P23471 2315 aaPredicted RBP11.87□□□□□ -0.51
RFFL-209ENST00000581265 PLXNA3P51805 1871 aa11.87□□□□□ -0.51
RFFL-209ENST00000581265 CCDC194A0A1B0GVG4 234 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 ASAP2O43150 1006 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 CDKL5O76039 1030 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 HOXA11P31270 313 aaPredicted RBP11.86□□□□□ -0.51
RFFL-209ENST00000581265 RNASELQ05823 741 aaKnown RBP11.86□□□□□ -0.51
RFFL-209ENST00000581265 SCRN1Q12765 414 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 EPHA7Q15375 998 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 LONRF3Q496Y0 759 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 ATAT1Q5SQI0 421 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 PLA2G4FQ68DD2 849 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 AGMOQ6ZNB7 445 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 ZNF280BQ86YH2 543 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 UBALD2Q8IYN6 164 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 KREMEN2Q8NCW0 462 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 BCL7CQ8WUZ0 217 aaPredicted RBP11.86□□□□□ -0.51
RFFL-209ENST00000581265 HAS1Q92839 578 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms