RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PLXNA4Q9HCM2 1894 aa16.49■□□□□ 0.23
SS18-212ENST00000579061 FAM105AQ9NUU6 356 aa16.49■□□□□ 0.23
SS18-212ENST00000579061 TYW1Q9NV66 732 aaKnown RBP16.49■□□□□ 0.23
SS18-212ENST00000579061 A0A087WWV3 80 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 ARHGEF35A5YM69 484 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 ITGB1P05556 798 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 LAG3P18627 525 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 GLRA2P23416 452 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 HOXA11P31270 313 aaPredicted RBP16.48■□□□□ 0.23
SS18-212ENST00000579061 UBE3AQ05086 875 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 CAPSQ13938 189 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 CLLU1OSQ5K130 101 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 SPOUT1Q5T280 376 aaKnown RBP16.48■□□□□ 0.23
SS18-212ENST00000579061 ARL6IP4Q66PJ3 421 aaKnown RBP16.48■□□□□ 0.23
SS18-212ENST00000579061 PADI6Q6TGC4 694 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 LRRC43Q8N309 656 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 KCTD17Q8N5Z5 321 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 KLHL23Q8NBE8 558 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 SPPL3Q8TCT6 385 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 ASAP3Q8TDY4 903 aa16.48■□□□□ 0.23
SS18-212ENST00000579061 COL25A1Q9BXS0 654 aaPredicted RBP16.48■□□□□ 0.23
SS18-212ENST00000579061 MRPL9Q9BYD2 267 aaKnown RBP16.48■□□□□ 0.23
SS18-212ENST00000579061 POLR3FQ9H1D9 316 aaPredicted RBP16.48■□□□□ 0.23
SS18-212ENST00000579061 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.47■□□□□ 0.23
SS18-212ENST00000579061 CARNS1A5YM72 827 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 NCK2O43639 380 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 ERLIN2O94905 339 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 CYP11B2P19099 503 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 IL17AQ16552 155 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 KRT79Q5XKE5 535 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 MRPL10Q7Z7H8 261 aaKnown RBP16.47■□□□□ 0.23
SS18-212ENST00000579061 COLGALT1Q8NBJ5 622 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 RNF169Q8NCN4 708 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 SNX29Q8TEQ0 813 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 PGBD4Q96DM1 585 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 CCDC51Q96ER9 411 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 ALG13Q9NP73 1137 aaKnown RBP16.47■□□□□ 0.23
SS18-212ENST00000579061 NCOR1O75376 2440 aa16.47■□□□□ 0.23
SS18-212ENST00000579061 INO80B-WBP1J3KQ70 363 aa16.46■□□□□ 0.23
SS18-212ENST00000579061 K7ELQ4 463 aaPredicted RBP16.46■□□□□ 0.23
SS18-212ENST00000579061 BMP15O95972 392 aa16.46■□□□□ 0.23
SS18-212ENST00000579061 NCBP1Q09161 790 aaKnown RBP16.46■□□□□ 0.23
SS18-212ENST00000579061 CAMK1Q14012 370 aa16.46■□□□□ 0.23
SS18-212ENST00000579061 COL19A1Q14993 1142 aa16.46■□□□□ 0.23
SS18-212ENST00000579061 ECM1Q16610 540 aa16.46■□□□□ 0.23
SS18-212ENST00000579061 LRRC55Q6ZSA7 311 aa16.46■□□□□ 0.23
SS18-212ENST00000579061 CNNM3Q8NE01 707 aa16.46■□□□□ 0.23
SS18-212ENST00000579061 HELQQ8TDG4 1101 aa16.46■□□□□ 0.23
SS18-212ENST00000579061 DDX19AQ9NUU7 478 aaKnown RBP16.46■□□□□ 0.23
SS18-212ENST00000579061 KIAA1024Q9UPX6 916 aa16.46■□□□□ 0.23
SS18-212ENST00000579061 PCDHB2Q9Y5E7 798 aa16.46■□□□□ 0.23
SS18-212ENST00000579061 SPTBN5Q9NRC6 3674 aaKnown RBP16.46■□□□□ 0.23
SS18-212ENST00000579061 CNTNAP2Q9UHC6 1331 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 TTC28Q96AY4 2481 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 TSPAN1O60635 241 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 PPM1AP35813 382 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 PLCB3Q01970 1234 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 TFF2Q03403 129 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 MBTD1Q05BQ5 628 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 AMHR2Q16671 573 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 TCEAL5Q5H9L2 206 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 HYIQ5T013 277 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 CDCA2Q69YH5 1023 aaPredicted RBP16.45■□□□□ 0.22
SS18-212ENST00000579061 NOTUMQ6P988 496 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 GLB1LQ6UWU2 654 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 POF1BQ8WVV4 589 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 PPP2R3CQ969Q6 453 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 SNX21Q969T3 373 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 PRIMPOLQ96LW4 560 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 ZNF558Q96NG5 402 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 C2orf40Q9H1Z8 148 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 BHMT2Q9H2M3 363 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 UBE2ZQ9H832 354 aaPredicted RBP16.45■□□□□ 0.22
SS18-212ENST00000579061 GPRC5CQ9NQ84 441 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 DAXXQ9UER7 740 aaPredicted RBP16.45■□□□□ 0.22
SS18-212ENST00000579061 DNM3Q9UQ16 869 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 LZTS1Q9Y250 596 aa16.45■□□□□ 0.22
SS18-212ENST00000579061 TCF20Q9UGU0 1960 aaKnown RBP16.45■□□□□ 0.22
SS18-212ENST00000579061 VCANP13611 3396 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 VPS37CA5D8V6 355 aaPredicted RBP16.44■□□□□ 0.22
SS18-212ENST00000579061 LRRIQ4A6NIV6 560 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 SLC26A4O43511 780 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 FGF18O76093 207 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 EYA4O95677 639 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 BMP1P13497 986 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 NCLP19338 710 aaKnown RBP16.44■□□□□ 0.22
SS18-212ENST00000579061 DNAJB1P25685 340 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 PPP2R5AQ15172 486 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 FAM187BQ17R55 369 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 UBXN11Q5T124 520 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 PDE12Q6L8Q7 609 aaKnown RBP16.44■□□□□ 0.22
SS18-212ENST00000579061 KCNT2Q6UVM3 1135 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 PPP4R3CPQ6ZMV5 832 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 MAEAQ7L5Y9 396 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 ZBTB8OSQ8IWT0 167 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 THNSL1Q8IYQ7 743 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 KIFAP3Q92845 792 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 PABPC5Q96DU9 382 aaKnown RBP16.44■□□□□ 0.22
SS18-212ENST00000579061 AK8Q96MA6 479 aa16.44■□□□□ 0.22
SS18-212ENST00000579061 MMTAG2Q9BU76 263 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms