RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 NBL1P41271 181 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 POLGP54098 1239 aaPredicted RBP15.33■□□□□ 0.04
CCDC40-216ENST00000576241 PLCB3Q01970 1234 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 CLLU1OSQ5K130 101 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 TWF2Q6IBS0 349 aaKnown RBP15.33■□□□□ 0.04
CCDC40-216ENST00000576241 NCAPH2Q6IBW4 605 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 KCNT2Q6UVM3 1135 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 LRRC55Q6ZSA7 311 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 SLFN12Q8IYM2 578 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 SMRP1Q8NCR6 262 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 MRPS27Q92552 414 aaKnown RBP15.33■□□□□ 0.04
CCDC40-216ENST00000576241 CEP170P1Q96L14 293 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 NLRP4Q96MN2 994 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 MRPL9Q9BYD2 267 aaKnown RBP15.33■□□□□ 0.04
CCDC40-216ENST00000576241 ENTPD7Q9NQZ7 604 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 BARX2Q9UMQ3 279 aaPredicted RBP15.33■□□□□ 0.04
CCDC40-216ENST00000576241 PIN4Q9Y237 131 aaKnown RBP15.33■□□□□ 0.04
CCDC40-216ENST00000576241 PPME1Q9Y570 386 aa15.33■□□□□ 0.04
CCDC40-216ENST00000576241 NCOR2Q9Y618 2525 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 PER2O15055 1255 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 GALR2O43603 387 aaPredicted RBP15.32■□□□□ 0.04
CCDC40-216ENST00000576241 EYA4O95677 639 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 SKIP12755 728 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 RFC5P40937 340 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 ERVFC1P60507 584 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 COASYQ13057 564 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 TRIM29Q14134 588 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 PLPP4Q5VZY2 271 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 CATSPER4Q7RTX7 472 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 POTEDQ86YR6 584 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 NECAB1Q8N987 351 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 HELQQ8TDG4 1101 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 RSPH1Q8WYR4 309 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 GTF3C6Q969F1 213 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 TCF25Q9BQ70 676 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 LXNQ9BS40 222 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 SPG21Q9NZD8 308 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 CLEC1BQ9P126 229 aa15.32■□□□□ 0.04
CCDC40-216ENST00000576241 FNDC1Q4ZHG4 1894 aaPredicted RBP15.31■□□□□ 0.04
CCDC40-216ENST00000576241 FSCN2O14926 492 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 GLP2RO95838 553 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 PBX3P40426 434 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 PHKA2P46019 1235 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 ALDH7A1P49419 539 aaKnown RBP15.31■□□□□ 0.04
CCDC40-216ENST00000576241 RAB27AP51159 221 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 NPEPPSP55786 919 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 NR5A1Q13285 461 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 CBX2Q14781 532 aaPredicted RBP15.31■□□□□ 0.04
CCDC40-216ENST00000576241 EPHA7Q15375 998 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 DUSP6Q16828 381 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 OTUD6AQ7L8S5 288 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 ZNF598Q86UK7 904 aaKnown RBP15.31■□□□□ 0.04
CCDC40-216ENST00000576241 C4orf19Q8IY42 314 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 ADSSL1Q8N142 457 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 PSPC1Q8WXF1 523 aaKnown RBP15.31■□□□□ 0.04
CCDC40-216ENST00000576241 HAS1Q92839 578 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 TRAIPQ9BWF2 469 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 NGRNQ9NPE2 291 aaKnown RBP15.31■□□□□ 0.04
CCDC40-216ENST00000576241 COL4A3BPQ9Y5P4 624 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 WDR87Q6ZQQ6 2873 aa15.31■□□□□ 0.04
CCDC40-216ENST00000576241 TPRP12270 2363 aaKnown RBP15.31■□□□□ 0.04
CCDC40-216ENST00000576241 GAS2O43903 313 aaKnown RBP15.3■□□□□ 0.04
CCDC40-216ENST00000576241 PDGFBP01127 241 aaPredicted RBP15.3■□□□□ 0.04
CCDC40-216ENST00000576241 FDPSP14324 419 aaKnown RBP15.3■□□□□ 0.04
CCDC40-216ENST00000576241 ATF7P17544 494 aaPredicted RBP15.3■□□□□ 0.04
CCDC40-216ENST00000576241 YWHABP31946 246 aaKnown RBP15.3■□□□□ 0.04
CCDC40-216ENST00000576241 NEK4P51957 841 aa15.3■□□□□ 0.04
CCDC40-216ENST00000576241 NUBP1P53384 320 aa15.3■□□□□ 0.04
CCDC40-216ENST00000576241 ME3Q16798 604 aa15.3■□□□□ 0.04
CCDC40-216ENST00000576241 GLB1LQ6UWU2 654 aa15.3■□□□□ 0.04
CCDC40-216ENST00000576241 TMC7Q7Z402 723 aa15.3■□□□□ 0.04
CCDC40-216ENST00000576241 KSR1Q8IVT5 923 aa15.3■□□□□ 0.04
CCDC40-216ENST00000576241 TCP11Q8WWU5 503 aa15.3■□□□□ 0.04
CCDC40-216ENST00000576241 NKD2Q969F2 451 aaPredicted RBP15.3■□□□□ 0.04
CCDC40-216ENST00000576241 DHX33Q9H6R0 707 aaKnown RBP15.3■□□□□ 0.04
CCDC40-216ENST00000576241 ZSWIM4Q9H7M6 989 aa15.3■□□□□ 0.04
CCDC40-216ENST00000576241 RGL1Q9NZL6 768 aa15.3■□□□□ 0.04
CCDC40-216ENST00000576241 WRAP73Q9P2S5 460 aaPredicted RBP15.3■□□□□ 0.04
CCDC40-216ENST00000576241 USP15Q9Y4E8 981 aaPredicted RBP15.3■□□□□ 0.04
CCDC40-216ENST00000576241 ZNF292O60281 2723 aa15.3■□□□□ 0.04
CCDC40-216ENST00000576241 PLXNA4Q9HCM2 1894 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 CARNS1A5YM72 827 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 FAM205CA6NFA0 338 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 LARGE1O95461 756 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 CYP4A11Q02928 519 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 BMS1Q14692 1282 aaKnown RBP15.29■□□□□ 0.04
CCDC40-216ENST00000576241 EMC2Q15006 297 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 XKR9Q5GH70 373 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 EARS2Q5JPH6 523 aaKnown RBP15.29■□□□□ 0.04
CCDC40-216ENST00000576241 FRMD5Q7Z6J6 570 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 SLC39A11Q8N1S5 342 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 ZNF579Q8NAF0 562 aaKnown RBP15.29■□□□□ 0.04
CCDC40-216ENST00000576241 PRPF31Q8WWY3 499 aaKnown RBP15.29■□□□□ 0.04
CCDC40-216ENST00000576241 TMEM143Q96AN5 459 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 PGBD4Q96DM1 585 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 DYDC2Q96IM9 177 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 IFT122Q9HBG6 1241 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 BMP2KQ9NSY1 1161 aaPredicted RBP15.29■□□□□ 0.04
CCDC40-216ENST00000576241 FAM105AQ9NUU6 356 aa15.29■□□□□ 0.04
CCDC40-216ENST00000576241 PCDHA12Q9UN75 941 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms