RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 EMSYQ7Z589 1322 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 ESYT3A0FGR9 886 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 MAPK13O15264 365 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 ATP9AO75110 1047 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 VAMP7P51809 220 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 SNRPFP62306 86 aaKnown RBP10.94□□□□□ -0.66
VPS53-220ENST00000576149 PPP3CAQ08209 521 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 MTMR2Q13614 643 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 UGCGQ16739 394 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 ARHGAP44Q17R89 818 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 HAUS6Q7Z4H7 955 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 RASGEF1CQ8N431 466 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 XXYLT1Q8NBI6 393 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 SLC16A10Q8TF71 515 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 IFT81Q8WYA0 676 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 RFFLQ8WZ73 363 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 HES6Q96HZ4 224 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 TRERF1Q96PN7 1200 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 RMDN3Q96TC7 470 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.94□□□□□ -0.665e-7■■□□□ 14.2
VPS53-220ENST00000576149 PDCD2LQ9BRP1 358 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 PXMP2Q9NR77 195 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 TMCO5BA8MYB1 307 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 WDR64B1ANS9 1081 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 PGRMC1O00264 195 aaKnown RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 FOXN3O00409 490 aaPredicted RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 BACH1O14867 736 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 CLGNO14967 610 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 ZBED4O75132 1171 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 CCNE2O96020 404 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 MYCLP12524 364 aaPredicted RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 JAK3P52333 1124 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 NCKAP1LP55160 1127 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 PSMC5P62195 406 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 CETN1Q12798 172 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 C1orf220Q5T0J3 134 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 LEKR1Q6ZMV7 388 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 DAAM2Q86T65 1068 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 KLHL7Q8IXQ5 586 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 SLC35G2Q8TBE7 412 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 CASKIN2Q8WXE0 1202 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 CTNNBL1Q8WYA6 563 aaPredicted RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 VTI1AQ96AJ9 217 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 CCDC43Q96MW1 224 aaKnown RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 SH2D3AQ9BRG2 576 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 RPAP3Q9H6T3 665 aaPredicted RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 OSGEPQ9NPF4 335 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 HSPBP1Q9NZL4 362 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 NOC2LQ9Y3T9 749 aaKnown RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 FER1L6Q2WGJ9 1857 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 TMEM150BA6NC51 233 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 GOLGA6CA6NDK9 693 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 GOLGA8KD6RF30 607 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 OPA1O60313 960 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 BUB1BO60566 1050 aaPredicted RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 HSF2BPO75031 334 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 FAM153BP0C7A2 387 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 GOLGA6DP0CG33 693 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 FDX1P10109 184 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 TNFAIP3P21580 790 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 SFNP31947 248 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 MCCD1P59942 119 aaPredicted RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 KRT76Q01546 638 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 PPATQ06203 517 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 PTPROQ16827 1216 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 FAM153CQ494X1 144 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 EPC2Q52LR7 807 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 RNF207Q6ZRF8 634 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 MREGQ8N565 214 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 EIF1ADQ8N9N8 165 aaKnown RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 IWS1Q96ST2 819 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 TAOK3Q9H2K8 898 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 PLEKHA4Q9H4M7 779 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 UBE2TQ9NPD8 197 aaPredicted RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 GPRC5CQ9NQ84 441 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 ANKEF1Q9NU02 776 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 GOLGA6AQ9NYA3 693 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 RGS17Q9UGC6 210 aaPredicted RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 FAM153AQ9UHL3 310 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 AMFRQ9UKV5 643 aa10.93□□□□□ -0.66
VPS53-220ENST00000576149 CTDP1Q9Y5B0 961 aaPredicted RBP10.93□□□□□ -0.66
VPS53-220ENST00000576149 CCDC188H7C350 402 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 VWA5AO00534 786 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 PMM2O15305 246 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 LRRN2O75325 713 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 RPS12P25398 132 aaKnown RBP10.92□□□□□ -0.66
VPS53-220ENST00000576149 GCLMP48507 274 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 PEX3P56589 373 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 TGFB2P61812 414 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 TRADDQ15628 312 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 PLCD3Q8N3E9 789 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 SLC17A8Q8NDX2 589 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 ZSWIM2Q8NEG5 633 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 FAM76AQ8TAV0 307 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 PLEKHO2Q8TD55 490 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.92□□□□□ -0.661e-7■■■■□ 26.6
VPS53-220ENST00000576149 AGPAT1Q99943 283 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 USP20Q9Y2K6 914 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 IGSF9BQ9UPX0 1349 aa10.92□□□□□ -0.66
VPS53-220ENST00000576149 ANKRD62A6NC57 917 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms