RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SERPINB13Q9UIV8 391 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 CDC23Q9UJX2 597 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 FBXO2Q9UK22 296 aaPredicted RBP6.87□□□□□ -1.31
VPS53-219ENST00000576019 LRCH1Q9Y2L9 728 aa6.87□□□□□ -1.31
VPS53-219ENST00000576019 PIK3C2GO75747 1445 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 IRS2Q9Y4H2 1338 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 C2orf71A6NGG8 1288 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 LRRC10BA6NIK2 292 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 EPB41L2O43491 1005 aaKnown RBP6.86□□□□□ -1.31
VPS53-219ENST00000576019 TUSC2O75896 110 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 POU2F2P09086 479 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 PLS3P13797 630 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 IFNGR1P15260 489 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 CD68P34810 354 aaPredicted RBP6.86□□□□□ -1.31
VPS53-219ENST00000576019 GPSM2P81274 684 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 POU4F1Q01851 419 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 TOMM20Q15388 145 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 HYIQ5T013 277 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 CRTC3Q6UUV7 619 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 C8orf86Q6ZUL3 223 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 GPR155Q7Z3F1 870 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 SUGP1Q8IWZ8 645 aaKnown RBP6.86□□□□□ -1.31
VPS53-219ENST00000576019 NPAS3Q8IXF0 933 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 MYCT1Q8N699 235 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 KIAA1958Q8N8K9 716 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 FBXL18Q96ME1 805 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 SLC2A13Q96QE2 648 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 ELF4Q99607 663 aaPredicted RBP6.86□□□□□ -1.31
VPS53-219ENST00000576019 BOCQ9BWV1 1114 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 B3GNT5Q9BYG0 378 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 ZDHHC5Q9C0B5 715 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 VPS11Q9H270 941 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 ARFGAP3Q9NP61 516 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 CATSPERZQ9NTU4 200 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 GPRC5BQ9NZH0 403 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 SLC4A7Q9Y6M7 1214 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 BCORQ6W2J9 1755 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 CHD6Q8TD26 2715 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 DCHS1Q96JQ0 3298 aa6.86□□□□□ -1.31
VPS53-219ENST00000576019 ANKRD11Q6UB99 2663 aaPredicted RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 KCNK3O14649 394 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 TERTO14746 1132 aaKnown RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 AURKAO14965 403 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 TLR5O60602 858 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 FKTNO75072 461 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 PRAMEF1O95521 474 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 TBC1D8O95759 1140 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 MX2P20592 715 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 ALAS2P22557 587 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 PEX2P28328 305 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 GRK3P35626 688 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 IL6STP40189 918 aaPredicted RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 GRK6P43250 576 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 PRIM2P49643 509 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 ADKP55263 362 aaKnown RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 PHC1P78364 1004 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 SMAD3P84022 425 aaKnown RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 DDX10Q13206 875 aaKnown RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 KCNAB2Q13303 367 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 ZNF174Q15697 407 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 SMAD2Q15796 467 aaKnown RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 ARHGAP44Q17R89 818 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 CLEC16AQ2KHT3 1053 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 UAP1L1Q3KQV9 507 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 TOR2AQ5JU69 321 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 TRAPPC3LQ5T215 181 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 FSTL4Q6MZW2 842 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 GPAT2Q6NUI2 795 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 MZT2AQ6P582 158 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 DARS2Q6PI48 645 aaKnown RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 C20orf204Q6ZNR8 217 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 USP50Q70EL3 339 aaPredicted RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 OTOP1Q7RTM1 612 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 DYMQ7RTS9 669 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 DENND1CQ8IV53 801 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 DRC7Q8IY82 874 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 OR2C3Q8N628 320 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 RCBTB1Q8NDN9 531 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 ENOX1Q8TC92 643 aaKnown RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 TRIM63Q969Q1 353 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 KIAA1191Q96A73 305 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 MVB12AQ96EY5 273 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 ZNF333Q96JL9 665 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 GDF15Q99988 308 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 QRSL1Q9H0R6 528 aaKnown RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 TMEM60Q9H2L4 133 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 CHST7Q9NS84 486 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 RRN3Q9NYV6 651 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 PRR13Q9NZ81 148 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 NXF1Q9UBU9 619 aaKnown RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 EVLQ9UI08 416 aaPredicted RBP6.85□□□□□ -1.31
VPS53-219ENST00000576019 SPO11Q9Y5K1 396 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 GPR45Q9Y5Y3 372 aa6.85□□□□□ -1.31
VPS53-219ENST00000576019 NUP155O75694 1391 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 WTIPA6NIX2 430 aaPredicted RBP6.84□□□□□ -1.31
VPS53-219ENST00000576019 DVL2O14641 736 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 WNT9AO14904 365 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 GSTA4O15217 222 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 SIGLEC6O43699 453 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 B3GALT2O43825 422 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms