RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 TBCAO75347 108 aaKnown RBP10.56□□□□□ -0.72
CCDC40-214ENST00000575431 FAM13AO94988 1023 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 GJB5O95377 273 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 PLS3P13797 630 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 RAB27AP51159 221 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 PEX3P56589 373 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 FAM189BP81408 668 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 MAPK7Q13164 816 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 DHX8Q14562 1220 aaKnown RBP10.56□□□□□ -0.72
CCDC40-214ENST00000575431 DSC3Q14574 896 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 E2F4Q16254 413 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 MAPK6Q16659 721 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 FAM187BQ17R55 369 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 TCTN1Q2MV58 587 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 NAALADL2Q58DX5 795 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 ARSHQ5FYA8 562 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 PPP4R3CPQ6ZMV5 832 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.56□□□□□ -0.72
CCDC40-214ENST00000575431 NPAS4Q8IUM7 802 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 CEP57L1Q8IYX8 460 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 MYOCDQ8IZQ8 938 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 CNNM3Q8NE01 707 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 KCNN1Q92952 543 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 DHX58Q96C10 678 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 ZNF668Q96K58 619 aaPredicted RBP10.56□□□□□ -0.72
CCDC40-214ENST00000575431 ADAM2Q99965 735 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 ZBED2Q9BTP6 218 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 PANK2Q9BZ23 570 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 TMX1Q9H3N1 280 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 FZD8Q9H461 694 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 TMEM134Q9H6X4 195 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 PARVGQ9HBI0 331 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 KMT5AQ9NQR1 393 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 KBTBD4Q9NVX7 518 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 MSRAQ9UJ68 235 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 LRFN2Q9ULH4 789 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 INSL6Q9Y581 213 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 PCDHA11Q9Y5I1 949 aa10.56□□□□□ -0.72
CCDC40-214ENST00000575431 TNRC18O15417 2968 aaPredicted RBP10.56□□□□□ -0.72
CCDC40-214ENST00000575431 TMEM265A0A087WTH1 108 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 A0A0U1RQF3 1178 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 CCDC169A6NNP5 214 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 C9IYK1 514 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 POLR2DO15514 142 aaKnown RBP10.55□□□□□ -0.72
CCDC40-214ENST00000575431 HOXA2O43364 376 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 EOMESO95936 686 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 MYL1P05976 194 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 GAP43P17677 238 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 NPTX2P47972 431 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 SARSP49591 514 aaKnown RBP10.55□□□□□ -0.72
CCDC40-214ENST00000575431 ZNF131P52739 623 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 DEFB103AP81534 67 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 MBTD1Q05BQ5 628 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 GIT2Q14161 759 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 APBB1IPQ7Z5R6 666 aaPredicted RBP10.55□□□□□ -0.72
CCDC40-214ENST00000575431 RTN4RL1Q86UN2 441 aaPredicted RBP10.55□□□□□ -0.72
CCDC40-214ENST00000575431 DAW1Q8N136 415 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 BSNDQ8WZ55 320 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 MRPS27Q92552 414 aaKnown RBP10.55□□□□□ -0.72
CCDC40-214ENST00000575431 DDX12PQ92771 950 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 RAD9AQ99638 391 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 REEP2Q9BRK0 252 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 TMEM161AQ9NX61 479 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 SEL1LQ9UBV2 794 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 PIN4Q9Y237 131 aaKnown RBP10.55□□□□□ -0.72
CCDC40-214ENST00000575431 HPSEQ9Y251 543 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 PCDHB7Q9Y5E2 793 aa10.55□□□□□ -0.72
CCDC40-214ENST00000575431 MKI67P46013 3256 aaKnown RBP10.54□□□□□ -0.72
CCDC40-214ENST00000575431 MYH11P35749 1972 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 A0A087X0B3 334 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 SFI1A8K8P3 1242 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 ACKR2O00590 384 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 TLL1O43897 1013 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 TRAK2O60296 914 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 ZNF623O75123 536 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 SLFN14P0C7P3 912 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 MAPTP10636 758 aaKnown RBP10.54□□□□□ -0.72
CCDC40-214ENST00000575431 PFKFB1P16118 471 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 SYKP43405 635 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 HTRA4P83105 476 aaPredicted RBP10.54□□□□□ -0.72
CCDC40-214ENST00000575431 STRN3Q13033 797 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 PRPF4BQ13523 1007 aaKnown RBP10.54□□□□□ -0.72
CCDC40-214ENST00000575431 TWF2Q6IBS0 349 aaKnown RBP10.54□□□□□ -0.72
CCDC40-214ENST00000575431 FAM109BQ6ICB4 259 aaPredicted RBP10.54□□□□□ -0.72
CCDC40-214ENST00000575431 CNNM4Q6P4Q7 775 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 NOTUMQ6P988 496 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 CCDC65Q8IXS2 484 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 HACE1Q8IYU2 909 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 MYCT1Q8N699 235 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 LRRC15Q8TF66 581 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 PGBD4Q96DM1 585 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 CHAMP1Q96JM3 812 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 MINDY3Q9H8M7 445 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 SLC28A3Q9HAS3 691 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 ARHGAP28Q9P2N2 729 aa10.54□□□□□ -0.72
CCDC40-214ENST00000575431 A0A1B0GUA9 196 aa10.53□□□□□ -0.72
CCDC40-214ENST00000575431 A0A1B0GVL5 298 aa10.53□□□□□ -0.72
CCDC40-214ENST00000575431 GRXCR1A8MXD5 290 aa10.53□□□□□ -0.72
CCDC40-214ENST00000575431 MGEA5O60502 916 aa10.53□□□□□ -0.72
CCDC40-214ENST00000575431 TSPAN1O60635 241 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms