RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 COL9A3Q14050 684 aaPredicted RBP7.73□□□□□ -1.17
VPS53-217ENST00000575100 MCMDC2Q4G0Z9 681 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 DGKKQ5KSL6 1271 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 MFSD14BQ5SR56 506 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 MIGA1Q8NAN2 632 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 TBC1D31Q96DN5 1066 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 TBCBQ99426 244 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 C22orf23Q9BZE7 217 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 RAI14Q9P0K7 980 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 MAFFQ9ULX9 164 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 HPS5Q9UPZ3 1129 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 FAM205AQ6ZU69 1335 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 SALL1Q9NSC2 1324 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 EFCAB14O75071 495 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 CFBP00751 764 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 CYP11A1P05108 521 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 XPAP23025 273 aaPredicted RBP7.72□□□□□ -1.17
VPS53-217ENST00000575100 CTNNA1P35221 906 aaKnown RBP7.72□□□□□ -1.17
VPS53-217ENST00000575100 PPM1AP35813 382 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 MAP3K12Q12852 859 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 UBE3CQ15386 1083 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 SV2CQ496J9 727 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 ZNF449Q6P9G9 518 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 PDZD4Q76G19 769 aaPredicted RBP7.72□□□□□ -1.17
VPS53-217ENST00000575100 IPCEF1Q8WWN9 437 aaPredicted RBP7.72□□□□□ -1.17
VPS53-217ENST00000575100 GAL3ST3Q96A11 431 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 BARD1Q99728 777 aaKnown RBP7.72□□□□□ -1.17
VPS53-217ENST00000575100 ACO2Q99798 780 aaKnown RBP7.72□□□□□ -1.17
VPS53-217ENST00000575100 FAM204AQ9H8W3 233 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 ZNF112Q9UJU3 913 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 MYH7P12883 1935 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 CCDC171Q6TFL3 1326 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 RAD50Q92878 1312 aa7.72□□□□□ -1.17
VPS53-217ENST00000575100 ZNF891A8MT65 544 aaPredicted RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 B4E171 279 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 F8W031 263 aaPredicted RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 HIP1O00291 1037 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 GPAA1O43292 621 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 PRKAB2O43741 272 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 FKBP9O95302 570 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 ZFYP08048 801 aaPredicted RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 MYBP10242 640 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 GRIA4P48058 902 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 DYNLL1P63167 89 aaKnown RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 GABREP78334 506 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 SLC7A5Q01650 507 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 RPL6Q02878 288 aaKnown RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 FAAP100Q0VG06 881 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 STRIP1Q5VSL9 837 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 ZCCHC8Q6NZY4 707 aaKnown RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 FKBP9P1Q75LS8 142 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 KIF18BQ86Y91 864 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 LCORLQ8N3X6 602 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 TMEM102Q8N9M5 508 aaPredicted RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 ZBTB34Q8NCN2 500 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 FLCNQ8NFG4 579 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 USP13Q92995 863 aaPredicted RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 ATP6V1E2Q96A05 226 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 ZBED3Q96IU2 234 aaPredicted RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 RIPOR3Q96MK2 946 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 RMDN3Q96TC7 470 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 NIFKQ9BYG3 293 aaKnown RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 ARMT1Q9H993 441 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 PLEKHA5Q9HAU0 1116 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 DISC1Q9NRI5 854 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.71□□□□□ -1.17
VPS53-217ENST00000575100 GPRC5BQ9NZH0 403 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 KANSL3Q9P2N6 904 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 POLHQ9Y253 713 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 PCDHGB6Q9Y5F9 930 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 PCDHAC2Q9Y5I4 1007 aa7.71□□□□□ -1.17
VPS53-217ENST00000575100 TCRBV16S1A1N1A0A5B0 115 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 UBE2Q2LH0YL09 131 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 REC8O95072 547 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 HSPD1P10809 573 aaKnown RBP7.71□□□□□ -1.18
VPS53-217ENST00000575100 BMP6P22004 513 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 CYP7A1P22680 504 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 AKAP5P24588 427 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 GRIA2P42262 883 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 DSG1Q02413 1049 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 CCNG2Q16589 344 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 PGM2L1Q6PCE3 622 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 FBXO46Q6PJ61 603 aaPredicted RBP7.71□□□□□ -1.18
VPS53-217ENST00000575100 NSMFQ6X4W1 530 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 MOB2Q70IA6 237 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 UBE2R2Q712K3 238 aaPredicted RBP7.71□□□□□ -1.18
VPS53-217ENST00000575100 ANKRD13BQ86YJ7 626 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 SLC30A5Q8TAD4 765 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 RUFY2Q8WXA3 655 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 MAP4K1Q92918 833 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 SPAG5Q96R06 1193 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 CHCHD6Q9BRQ6 235 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 RIOK1Q9BRS2 568 aaKnown RBP7.71□□□□□ -1.18
VPS53-217ENST00000575100 GSX2Q9BZM3 304 aa7.71□□□□□ -1.18
VPS53-217ENST00000575100 OTOFQ9HC10 1997 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 SMIM22K7EJ46 135 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 GPR25O00155 361 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 WNT10BO00744 389 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 XYLBO75191 536 aa7.7□□□□□ -1.18
VPS53-217ENST00000575100 SMARCA1P28370 1054 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms