RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SPIRE1Q08AE8 756 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 STK3Q13188 491 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 LONRF3Q496Y0 759 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 UBXN11Q5T124 520 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 KANK3Q6NY19 840 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 LLGL2Q6P1M3 1020 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 AGMOQ6ZNB7 445 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 ZNF410Q86VK4 478 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 MRPL43Q8N983 215 aaKnown RBP7.55□□□□□ -1.2
VPS53-213ENST00000572334 RNF169Q8NCN4 708 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 NLRP7Q8WX94 980 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 AUTS2Q8WXX7 1259 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 TNFRSF25Q93038 417 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 APOL5Q9BWW9 433 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 ZBP1Q9H171 429 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 KCNH6Q9H252 994 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 DHX33Q9H6R0 707 aaKnown RBP7.55□□□□□ -1.2
VPS53-213ENST00000572334 ENTPD7Q9NQZ7 604 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 CHST12Q9NRB3 414 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 TBC1D13Q9NVG8 400 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 SPG21Q9NZD8 308 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 SUCLA2Q9P2R7 463 aaPredicted RBP7.55□□□□□ -1.2
VPS53-213ENST00000572334 DNAJB4Q9UDY4 337 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 DDX25Q9UHL0 483 aaKnown RBP7.55□□□□□ -1.2
VPS53-213ENST00000572334 TCEAL9Q9UHQ7 104 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 CYP46A1Q9Y6A2 500 aa7.55□□□□□ -1.2
VPS53-213ENST00000572334 PTPRZ1P23471 2315 aaPredicted RBP7.55□□□□□ -1.2
VPS53-213ENST00000572334 NOTCH4Q99466 2003 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 SPTBN4Q9H254 2564 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 FSD2A1L4K1 749 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 DDX11L8A8MPP1 907 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 WNT7AO00755 349 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 DDHD2O94830 711 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 EFEMP2O95967 443 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 PDGFBP01127 241 aaPredicted RBP7.54□□□□□ -1.2
VPS53-213ENST00000572334 GALTP07902 379 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 FDPSP14324 419 aaKnown RBP7.54□□□□□ -1.2
VPS53-213ENST00000572334 PPM1AP35813 382 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 MRE11P49959 708 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 VCPP55072 806 aaKnown RBP7.54□□□□□ -1.2
VPS53-213ENST00000572334 PSMC5P62195 406 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 SIGLEC14Q08ET2 396 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 TCF15Q12870 199 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 NONOQ15233 471 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS53-213ENST00000572334 LETM2Q2VYF4 491 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 PPP4R3AQ6IN85 833 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 GALNT17Q6IS24 598 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 TMC7Q7Z402 723 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 MRPL10Q7Z7H8 261 aaKnown RBP7.54□□□□□ -1.2
VPS53-213ENST00000572334 ZNF280BQ86YH2 543 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 RHPN2Q8IUC4 686 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 TRIM22Q8IYM9 498 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 FAM177A1Q8N128 213 aaPredicted RBP7.54□□□□□ -1.2
VPS53-213ENST00000572334 SLC22A17Q8WUG5 538 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 IGSF21Q96ID5 467 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 MFSD14AQ96MC6 490 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 GCOM2Q9BZD3 368 aaPredicted RBP7.54□□□□□ -1.2
VPS53-213ENST00000572334 C22orf23Q9BZE7 217 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 SMOC2Q9H3U7 446 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 POMKQ9H5K3 350 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 XPNPEP1Q9NQW7 623 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 CYP26B1Q9NR63 512 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 AGPAT5Q9NUQ2 364 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 FAM105AQ9NUU6 356 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 DACT1Q9NYF0 836 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 RGL1Q9NZL6 768 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 PUF60Q9UHX1 559 aaKnown RBP7.54□□□□□ -1.2
VPS53-213ENST00000572334 TPCN1Q9ULQ1 816 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 IRAK3Q9Y616 596 aa7.54□□□□□ -1.2
VPS53-213ENST00000572334 ZFHX2Q9C0A1 2572 aaPredicted RBP7.54□□□□□ -1.2
VPS53-213ENST00000572334 STK36Q9NRP7 1315 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 C2CD4DB7Z1M9 353 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 PFKFB2O60825 505 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 LILRB3O75022 631 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 ZC3H11AO75152 810 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS53-213ENST00000572334 LARGE1O95461 756 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 P4HBP07237 508 aaKnown RBP7.53□□□□□ -1.2
VPS53-213ENST00000572334 WEE2P0C1S8 567 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 CTSAP10619 480 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 EPCAMP16422 314 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 HOXB8P17481 243 aaPredicted RBP7.53□□□□□ -1.2
VPS53-213ENST00000572334 SP100P23497 879 aaPredicted RBP7.53□□□□□ -1.2
VPS53-213ENST00000572334 QARSP47897 775 aaKnown RBP7.53□□□□□ -1.2
VPS53-213ENST00000572334 SLC11A1P49279 550 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 CDC42EP1Q00587 391 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 KRT17Q04695 432 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 ST3GAL1Q11201 340 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 SMC1AQ14683 1233 aaKnown RBP7.53□□□□□ -1.2
VPS53-213ENST00000572334 EPHA7Q15375 998 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 PTPN21Q16825 1174 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 NOMO2Q5JPE7 1267 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 TWF2Q6IBS0 349 aaKnown RBP7.53□□□□□ -1.2
VPS53-213ENST00000572334 KRT25Q7Z3Z0 450 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 DDX53Q86TM3 631 aaKnown RBP7.53□□□□□ -1.2
VPS53-213ENST00000572334 C4orf19Q8IY42 314 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 ABI1Q8IZP0 508 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 VPS52Q8N1B4 723 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 FBXL6Q8N531 539 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 C12orf76Q8N812 135 aaPredicted RBP7.53□□□□□ -1.2
VPS53-213ENST00000572334 SMG8Q8ND04 991 aaKnown RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms