RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ATP6V0A2Q9Y487 856 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 SPEF1Q9Y4P9 236 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 CDHR2Q9BYE9 1310 aa7.18□□□□□ -1.26
VPS53-212ENST00000572259 DNAJC25-GNG10A0A024R161 153 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 TRBV23-1A0A0A0MS06 115 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 ANO9A1A5B4 782 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 AURKAO14965 403 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 IPO8O15397 1037 aaKnown RBP7.17□□□□□ -1.26
VPS53-212ENST00000572259 ZNF205O95201 554 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 CPP00450 1065 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 IGKV5-2P06315 115 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 PABPC1P11940 636 aaKnown RBP7.17□□□□□ -1.26
VPS53-212ENST00000572259 L1CAMP32004 1257 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 IARSP41252 1262 aaKnown RBP7.17□□□□□ -1.26
VPS53-212ENST00000572259 NEK3P51956 506 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 ITKQ08881 620 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 SCRN1Q12765 414 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 GCKRQ14397 625 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 YOD1Q5VVQ6 348 aaPredicted RBP7.17□□□□□ -1.26
VPS53-212ENST00000572259 RNF219Q5W0B1 726 aaPredicted RBP7.17□□□□□ -1.26
VPS53-212ENST00000572259 DPP8Q6V1X1 898 aaPredicted RBP7.17□□□□□ -1.26
VPS53-212ENST00000572259 ANKRD18AQ8IVF6 992 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 KSR1Q8IVT5 923 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 SCUBE1Q8IWY4 988 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 TRMT2AQ8IZ69 625 aaKnown RBP7.17□□□□□ -1.26
VPS53-212ENST00000572259 NAT16Q8N8M0 369 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 PPHLN1Q8NEY8 458 aaKnown RBP7.17□□□□□ -1.26
VPS53-212ENST00000572259 KCTD13Q8WZ19 329 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 ELAC2Q9BQ52 826 aaKnown RBP7.17□□□□□ -1.26
VPS53-212ENST00000572259 SMC4Q9NTJ3 1288 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 SLC5A4Q9NY91 659 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 POLG2Q9UHN1 485 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 NOL7Q9UMY1 257 aaKnown RBP7.17□□□□□ -1.26
VPS53-212ENST00000572259 RABGAP1Q9Y3P9 1069 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 BACE2Q9Y5Z0 518 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 ABCC4O15439 1325 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 ADCY9O60503 1353 aa7.17□□□□□ -1.26
VPS53-212ENST00000572259 LAMB2P55268 1798 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 GLTPD2A6NH11 291 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 KIAA1324LA8MWY0 1029 aaPredicted RBP7.16□□□□□ -1.26
VPS53-212ENST00000572259 VSTM5A8MXK1 200 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 PRPF3O43395 683 aaKnown RBP7.16□□□□□ -1.26
VPS53-212ENST00000572259 ABLIM3O94929 683 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 IFNGR1P15260 489 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 VEGFAP15692 232 aaPredicted RBP7.16□□□□□ -1.26
VPS53-212ENST00000572259 SPINK2P20155 84 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 SARSP49591 514 aaKnown RBP7.16□□□□□ -1.26
VPS53-212ENST00000572259 TEKQ02763 1124 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 KRT72Q14CN4 511 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 FAM209AQ5JX71 171 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 ZMYM1Q5SVZ6 1142 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 HYIQ5T013 277 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 ZNF574Q6ZN55 896 aaPredicted RBP7.16□□□□□ -1.26
VPS53-212ENST00000572259 UBE3BQ7Z3V4 1068 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 SPRED2Q7Z698 418 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 ZNF354CQ86Y25 554 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 SSH1Q8WYL5 1049 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 SCLT1Q96NL6 688 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 EYA3Q99504 573 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 MCMBPQ9BTE3 642 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 DHRS4Q9BTZ2 278 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 PLA2G12BQ9BX93 195 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 ZNF277Q9NRM2 450 aaPredicted RBP7.16□□□□□ -1.26
VPS53-212ENST00000572259 AP5S1Q9NUS5 200 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 FRMD4BQ9Y2L6 1034 aa7.16□□□□□ -1.26
VPS53-212ENST00000572259 TAF1P21675 1872 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 PPIP5K2O43314 1243 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 WNT11O96014 354 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 DDIT3P35638 169 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 IGHMBP2P38935 993 aaKnown RBP7.15□□□□□ -1.26
VPS53-212ENST00000572259 HALP42357 657 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 GFRA1P56159 465 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 CTSWP56202 376 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 SF1Q15637 639 aaKnown RBP7.15□□□□□ -1.26
VPS53-212ENST00000572259 SLC4A8Q2Y0W8 1093 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 FNDC3BQ53EP0 1204 aaKnown RBP7.15□□□□□ -1.26
VPS53-212ENST00000572259 BEND3Q5T5X7 828 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 EEF1DP3Q658K8 133 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 TTLL5Q6EMB2 1281 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 TOGARAM2Q6ZUX3 1019 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 TP53INP2Q8IXH6 220 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 TTLL11Q8NHH1 800 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 WDR66Q8TBY9 1149 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 PI4K2BQ8TCG2 481 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 ATXN2LQ8WWM7 1075 aaKnown RBP7.15□□□□□ -1.26
VPS53-212ENST00000572259 ERP27Q96DN0 273 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 TRMT2BQ96GJ1 504 aaKnown RBP7.15□□□□□ -1.26
VPS53-212ENST00000572259 MPHOSPH8Q99549 860 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 YIPF4Q9BSR8 244 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 TARS2Q9BW92 718 aaKnown RBP7.15□□□□□ -1.26
VPS53-212ENST00000572259 RHOBTB2Q9BYZ6 727 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 API5Q9BZZ5 524 aaKnown RBP7.15□□□□□ -1.26
VPS53-212ENST00000572259 CSRNP2Q9H175 543 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 GPRC5CQ9NQ84 441 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 INTS7Q9NVH2 962 aaKnown RBP7.15□□□□□ -1.26
VPS53-212ENST00000572259 SLAMF8Q9P0V8 285 aa7.15□□□□□ -1.26
VPS53-212ENST00000572259 TNRC6CQ9HCJ0 1690 aaKnown RBP7.15□□□□□ -1.27
VPS53-212ENST00000572259 DDX60Q8IY21 1712 aaKnown RBP7.15□□□□□ -1.27
VPS53-212ENST00000572259 BICDL2A1A5D9 508 aa7.14□□□□□ -1.27
VPS53-212ENST00000572259 ANKRD18BA2A2Z9 1011 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms