RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 MXI1P50539 228 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 DNAJC3Q13217 504 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 ZC2HC1CQ53FD0 456 aaPredicted RBP12.23□□□□□ -0.45
CLN3-238ENST00000569430 GPATCH4Q5T3I0 446 aaKnown RBP12.23□□□□□ -0.45
CLN3-238ENST00000569430 ZNF662Q6ZS27 426 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 ADGRF4Q8IZF3 695 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 AGAP11Q8TF27 550 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 TNFRSF25Q93038 417 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 PNMA5Q96PV4 448 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 IL17RBQ9NRM6 502 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 CHD2O14647 1828 aaKnown RBP12.23□□□□□ -0.45
CLN3-238ENST00000569430 RASA1P20936 1047 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 MAPK7Q13164 816 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 SPARCL1Q14515 664 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 CPXCR1Q8N123 301 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 C4orf33Q8N1A6 199 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 CCDC89Q8N998 374 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 SH3GL3Q99963 347 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 SH2D3AQ9BRG2 576 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 NUP85Q9BW27 656 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 AMNQ9BXJ7 453 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 PPP1R9AQ9ULJ8 1098 aa12.23□□□□□ -0.45
CLN3-238ENST00000569430 PPP1R12AO14974 1030 aaPredicted RBP12.22□□□□□ -0.45
CLN3-238ENST00000569430 GYG2O15488 501 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 COMTP21964 271 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 TARSP26639 723 aaKnown RBP12.22□□□□□ -0.45
CLN3-238ENST00000569430 NSFP46459 744 aaKnown RBP12.22□□□□□ -0.45
CLN3-238ENST00000569430 ALDH5A1P51649 535 aaPredicted RBP12.22□□□□□ -0.45
CLN3-238ENST00000569430 DYNLT1P63172 113 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 SEPT14Q6ZU15 432 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 APBB1IPQ7Z5R6 666 aaPredicted RBP12.22□□□□□ -0.45
CLN3-238ENST00000569430 NEDD1Q8NHV4 660 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 ZNF564Q8TBZ8 553 aaPredicted RBP12.22□□□□□ -0.45
CLN3-238ENST00000569430 IMPG2Q9BZV3 1241 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 TTYH3Q9C0H2 523 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 INTS2Q9H0H0 1204 aaKnown RBP12.22□□□□□ -0.45
CLN3-238ENST00000569430 DIS3Q9Y2L1 958 aaKnown RBP12.22□□□□□ -0.45
CLN3-238ENST00000569430 PCDHGC5Q9Y5F6 944 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 RSPH10B2B2RC85 870 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 RSPH10BP0C881 870 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 ESRRAP11474 423 aaPredicted RBP12.22□□□□□ -0.45
CLN3-238ENST00000569430 PLS3P13797 630 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 ARHGAP4P98171 946 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 DDR1Q08345 913 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 BFSP1Q12934 665 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 AADACL2Q6P093 401 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 SLC30A9Q6PML9 568 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 CD302Q8IX05 232 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 C3orf20Q8ND61 904 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 SLC30A5Q8TAD4 765 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 SCFD1Q8WVM8 642 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 C15orf41Q9Y2V0 281 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 C5P01031 1676 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 MYH8P13535 1937 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 I3L4J1 428 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 PHF2O75151 1096 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 RCSD1Q6JBY9 416 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 MREGQ8N565 214 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 BTBD6Q96KE9 485 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 NEUROG2Q9H2A3 272 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 PRM3Q9NNZ6 103 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 ZFP69BQ9UJL9 534 aa12.22□□□□□ -0.45
CLN3-238ENST00000569430 RASSF10A6NK89 507 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 SGK1O00141 431 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 TLR2O60603 784 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 UPP2O95045 317 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 AKR1B1P15121 316 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 SBK1Q52WX2 424 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 FAM102BQ5T8I3 360 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 HIPK4Q8NE63 616 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 RNF25Q96BH1 459 aaPredicted RBP12.21□□□□□ -0.45
CLN3-238ENST00000569430 DYDC2Q96IM9 177 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 DLGAP2Q9P1A6 1054 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 HAO1Q9UJM8 370 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 CAMTA1Q9Y6Y1 1673 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 PALM3A6NDB9 673 aaPredicted RBP12.21□□□□□ -0.45
CLN3-238ENST00000569430 GOLGA8RI6L899 631 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 ZBTB5O15062 677 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 AKAP3O75969 853 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 MYCLP12524 364 aaPredicted RBP12.21□□□□□ -0.45
CLN3-238ENST00000569430 GAP43P17677 238 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 DRD4P21917 467 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 DOK7Q18PE1 504 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 C4orf32Q8N8J7 132 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 SPDYE1Q8NFV5 336 aaPredicted RBP12.21□□□□□ -0.45
CLN3-238ENST00000569430 PURBQ96QR8 312 aaKnown RBP12.21□□□□□ -0.45
CLN3-238ENST00000569430 MXD3Q9BW11 206 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 CARD9Q9H257 536 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 STOML1Q9UBI4 398 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 MCM8Q9UJA3 840 aa12.21□□□□□ -0.45
CLN3-238ENST00000569430 DCTN3O75935 186 aa12.21□□□□□ -0.46
CLN3-238ENST00000569430 CYP11B2P19099 503 aa12.21□□□□□ -0.46
CLN3-238ENST00000569430 HNRNPH3P31942 346 aaKnown RBP12.21□□□□□ -0.46
CLN3-238ENST00000569430 CTCFP49711 727 aaPredicted RBP12.21□□□□□ -0.46
CLN3-238ENST00000569430 FXR2P51116 673 aaKnown RBP eCLIP12.21□□□□□ -0.46
CLN3-238ENST00000569430 CACNB3P54284 484 aa12.21□□□□□ -0.46
CLN3-238ENST00000569430 TMEM154Q6P9G4 183 aa12.21□□□□□ -0.46
CLN3-238ENST00000569430 LRRC55Q6ZSA7 311 aa12.21□□□□□ -0.46
CLN3-238ENST00000569430 CEP128Q6ZU80 1094 aa12.21□□□□□ -0.46
CLN3-238ENST00000569430 SHISA4Q96DD7 197 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms