RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 RPS8P62241 208 aaKnown RBP11.64□□□□□ -0.55
CLK3-226ENST00000569406 KAZNQ674X7 775 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 KRI1Q8N9T8 703 aaKnown RBP11.64□□□□□ -0.55
CLK3-226ENST00000569406 RBBP8NLQ8NC74 664 aaPredicted RBP11.64□□□□□ -0.55
CLK3-226ENST00000569406 ZSCAN10Q96SZ4 725 aaPredicted RBP11.64□□□□□ -0.55
CLK3-226ENST00000569406 RAB17Q9H0T7 212 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 hCG_1642624A0A1W2PR95 340 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 SPDYE16A6NNV3 312 aaPredicted RBP11.64□□□□□ -0.55
CLK3-226ENST00000569406 TPBGLP0DKB5 382 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 VPS41P49754 854 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 COPS2P61201 443 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 MAGOHP61326 146 aaKnown RBP11.64□□□□□ -0.55
CLK3-226ENST00000569406 CAVIN3Q969G5 261 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 MAGOHBQ96A72 148 aaKnown RBP11.64□□□□□ -0.55
CLK3-226ENST00000569406 MAML3Q96JK9 1138 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 SMC6Q96SB8 1091 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 NAV1Q8NEY1 1877 aa11.64□□□□□ -0.55
CLK3-226ENST00000569406 COL6A2P12110 1019 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 VAV1P15498 845 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 COG7P83436 770 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 CYLC2Q14093 348 aaPredicted RBP11.63□□□□□ -0.55
CLK3-226ENST00000569406 HLTFQ14527 1009 aaKnown RBP eCLIP11.63□□□□□ -0.55
CLK3-226ENST00000569406 LIN52Q52LA3 116 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 EAPPQ56P03 285 aaPredicted RBP11.63□□□□□ -0.55
CLK3-226ENST00000569406 LRRC43Q8N309 656 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 RETREG2Q8NC44 543 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 RBM46Q8TBY0 533 aaKnown RBP11.63□□□□□ -0.55
CLK3-226ENST00000569406 HAPLN3Q96S86 360 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 SELENOSQ9BQE4 189 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 EPB41L5Q9HCM4 733 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 SAMSN1Q9NSI8 373 aaKnown RBP11.63□□□□□ -0.55
CLK3-226ENST00000569406 NMRK1Q9NWW6 199 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 CLIC5Q9NZA1 410 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 LRRC37AA6NMS7 1700 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 ZSCAN5CA6NGD5 496 aaPredicted RBP11.63□□□□□ -0.55
CLK3-226ENST00000569406 MINDY4BA8MYZ0 360 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 COBLO75128 1261 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 TKTP29401 623 aaKnown RBP11.63□□□□□ -0.55
CLK3-226ENST00000569406 ARFIP2P53365 341 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 RTP1P59025 263 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 TTLL12Q14166 644 aaPredicted RBP11.63□□□□□ -0.55
CLK3-226ENST00000569406 NFIXQ14938 502 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 SRBD1Q8N5C6 995 aaKnown RBP11.63□□□□□ -0.55
CLK3-226ENST00000569406 SUPT20HQ8NEM7 779 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 CCDC42Q96M95 316 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 C8orf37Q96NL8 207 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 TMBIM4Q9HC24 238 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 TRPC7Q9HCX4 862 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 IL17RBQ9NRM6 502 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 ATP8A2Q9NTI2 1148 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 CNTNAP5Q8WYK1 1306 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 MACROD2A1Z1Q3 448 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 USP17L12C9JPN9 530 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 USP17L21D6R901 530 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 ADCY3O60266 1144 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 APOEP02649 317 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 IRF5Q13568 498 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 PDE1CQ14123 709 aaPredicted RBP11.63□□□□□ -0.55
CLK3-226ENST00000569406 ARHGEF6Q15052 776 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 ANO5Q75V66 913 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 TMTC1Q8IUR5 882 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 STKLD1Q8NE28 680 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 PIGOQ8TEQ8 1089 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.63□□□□□ -0.55
CLK3-226ENST00000569406 FAM136AQ96C01 138 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 NUP88Q99567 741 aaPredicted RBP11.63□□□□□ -0.55
CLK3-226ENST00000569406 ETNK1Q9HBU6 452 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 PNMA3Q9UL41 463 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 TRIM17Q9Y577 477 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 PCDHA5Q9Y5H7 936 aa11.63□□□□□ -0.55
CLK3-226ENST00000569406 PSMD14O00487 310 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 MFAP3LO75121 409 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 DEXIO95424 95 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 ENPP1P22413 925 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 CXCR5P32302 372 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 CCT8P50990 548 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 FAM209AQ5JX71 171 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 IFT20Q8IY31 132 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 ATP8B4Q8TF62 1192 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 STAMQ92783 540 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 PHF12Q96QT6 1004 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 HNRNPABQ99729 332 aaKnown RBP11.62□□□□□ -0.55
CLK3-226ENST00000569406 NUP85Q9BW27 656 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 RNF26Q9BY78 433 aaPredicted RBP11.62□□□□□ -0.55
CLK3-226ENST00000569406 PSTPIP2Q9H939 334 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 METTL5Q9NRN9 209 aaKnown RBP11.62□□□□□ -0.55
CLK3-226ENST00000569406 KCNH3Q9ULD8 1083 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 FAM32AQ9Y421 112 aaKnown RBP11.62□□□□□ -0.55
CLK3-226ENST00000569406 FADS3Q9Y5Q0 445 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 AFF2P51816 1311 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 DDX5P17844 614 aaKnown RBP11.62□□□□□ -0.55
CLK3-226ENST00000569406 SLC16A2P36021 539 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 ERVK-24P63145 666 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 MSLNQ13421 630 aaPredicted RBP11.62□□□□□ -0.55
CLK3-226ENST00000569406 IL17AQ16552 155 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 RAVER1Q8IY67 606 aaKnown RBP11.62□□□□□ -0.55
CLK3-226ENST00000569406 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.62□□□□□ -0.55
CLK3-226ENST00000569406 LRRC34Q8IZ02 419 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 SCAIQ8N9R8 606 aa11.62□□□□□ -0.55
CLK3-226ENST00000569406 SPATA4Q8NEY3 305 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms