RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MCM3P25205 808 aa22.04■■□□□ 1.12
CLN3-230ENST00000568076 MATR3P43243 847 aaKnown RBP eCLIP22.04■■□□□ 1.12
CLN3-230ENST00000568076 GCLMP48507 274 aa22.04■■□□□ 1.12
CLN3-230ENST00000568076 DNA2P51530 1060 aa22.04■■□□□ 1.12
CLN3-230ENST00000568076 SP4Q02446 784 aa22.04■■□□□ 1.12
CLN3-230ENST00000568076 SUPT20HL1Q3ZLR7 823 aa22.04■■□□□ 1.12
CLN3-230ENST00000568076 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.04■■□□□ 1.12
CLN3-230ENST00000568076 CCDC60Q8IWA6 550 aaPredicted RBP22.04■■□□□ 1.12
CLN3-230ENST00000568076 MSL3Q8N5Y2 521 aaKnown RBP22.04■■□□□ 1.12
CLN3-230ENST00000568076 LRRC57Q8N9N7 239 aa22.04■■□□□ 1.12
CLN3-230ENST00000568076 U2AF1L4Q8WU68 220 aaKnown RBP22.04■■□□□ 1.12
CLN3-230ENST00000568076 IWS1Q96ST2 819 aa22.04■■□□□ 1.12
CLN3-230ENST00000568076 JPH1Q9HDC5 661 aaPredicted RBP22.04■■□□□ 1.12
CLN3-230ENST00000568076 ZCCHC17Q9NP64 241 aaKnown RBP22.04■■□□□ 1.12
CLN3-230ENST00000568076 SNCAIPQ9Y6H5 919 aa22.04■■□□□ 1.12
CLN3-230ENST00000568076 WDR81Q562E7 1941 aa22.04■■□□□ 1.12
CLN3-230ENST00000568076 DOCK5Q9H7D0 1870 aa22.04■■□□□ 1.12
CLN3-230ENST00000568076 PFASO15067 1338 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 MYPNQ86TC9 1320 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 GOLGA8IPA6NC78 632 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 GOLGA8JA6NMD2 632 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 LRRIQ3A6PVS8 624 aaPredicted RBP22.03■■□□□ 1.12
CLN3-230ENST00000568076 MAPK13O15264 365 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 PEX10O60683 326 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 ADRB2P07550 413 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 PAFAH1B1P43034 410 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 SNRPFP62306 86 aaKnown RBP22.03■■□□□ 1.12
CLN3-230ENST00000568076 ARHGAP44Q17R89 818 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 EPC2Q52LR7 807 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 MAP4K3Q8IVH8 894 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 GLYCTKQ8IVS8 523 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 ATP6V0A1Q93050 837 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 GOLPH3Q9H4A6 298 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 RBM12Q9NTZ6 932 aaKnown RBP22.03■■□□□ 1.12
CLN3-230ENST00000568076 SLC9A2Q9UBY0 812 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 DMGDHQ9UI17 866 aaKnown RBP22.03■■□□□ 1.12
CLN3-230ENST00000568076 SPATA31C2B4DYI2 1134 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 POLR3GO15318 223 aaPredicted RBP22.03■■□□□ 1.12
CLN3-230ENST00000568076 PSAPP07602 524 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 H2AFZP0C0S5 128 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 ACTR2P61160 394 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 MRPS25P82663 173 aaKnown RBP22.03■■□□□ 1.12
CLN3-230ENST00000568076 SP2Q02086 613 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 DMP1Q13316 513 aaPredicted RBP22.03■■□□□ 1.12
CLN3-230ENST00000568076 VGLL4Q14135 290 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 CCNI2Q6ZMN8 369 aaPredicted RBP22.03■■□□□ 1.12
CLN3-230ENST00000568076 H2AFVQ71UI9 128 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 OTUD6AQ7L8S5 288 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 ARHGEF19Q8IW93 802 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 GSPT2Q8IYD1 628 aaKnown RBP22.03■■□□□ 1.12
CLN3-230ENST00000568076 SLC17A8Q8NDX2 589 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 HINFPQ9BQA5 517 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 PDE11AQ9HCR9 933 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 PDLIM7Q9NR12 457 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 DAAM1Q9Y4D1 1078 aa22.03■■□□□ 1.12
CLN3-230ENST00000568076 LOC285556D6RIA3 1793 aa22.02■■□□□ 1.12
CLN3-230ENST00000568076 FOXN3O00409 490 aaPredicted RBP22.02■■□□□ 1.12
CLN3-230ENST00000568076 NOP2P46087 812 aaKnown RBP22.02■■□□□ 1.12
CLN3-230ENST00000568076 FSTL1Q12841 308 aa22.02■■□□□ 1.12
CLN3-230ENST00000568076 CFAP221Q4G0U5 840 aa22.02■■□□□ 1.12
CLN3-230ENST00000568076 TREML2Q5T2D2 321 aa22.02■■□□□ 1.12
CLN3-230ENST00000568076 ABHD15Q6UXT9 468 aa22.02■■□□□ 1.12
CLN3-230ENST00000568076 CBWD2Q8IUF1 395 aa22.02■■□□□ 1.12
CLN3-230ENST00000568076 TPCN2Q8NHX9 752 aa22.02■■□□□ 1.12
CLN3-230ENST00000568076 NTPCRQ9BSD7 190 aaKnown RBP22.02■■□□□ 1.12
CLN3-230ENST00000568076 RNF14Q9UBS8 474 aa22.02■■□□□ 1.12
CLN3-230ENST00000568076 INTUQ9ULD6 942 aa22.02■■□□□ 1.12
CLN3-230ENST00000568076 POLR2AP24928 1970 aaKnown RBP22.02■■□□□ 1.12
CLN3-230ENST00000568076 DENND3A2RUS2 1198 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 P4HA2O15460 535 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 LMNB1P20700 586 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 SMTNP53814 917 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 MCCD1P59942 119 aaPredicted RBP22.01■■□□□ 1.11
CLN3-230ENST00000568076 SPIRE2Q8WWL2 714 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 CNKSR2Q8WXI2 1034 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 ZBTB9Q96C00 473 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 CDHR1Q96JP9 859 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 KMT5AQ9NQR1 393 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 XPNPEP1Q9NQW7 623 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 ADGRA3Q8IWK6 1321 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 A0A0A6YYK5 440 aaPredicted RBP22.01■■□□□ 1.11
CLN3-230ENST00000568076 N4BP1O75113 896 aaKnown RBP22.01■■□□□ 1.11
CLN3-230ENST00000568076 STAM2O75886 525 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 RFX1P22670 979 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 CNGA1P29973 690 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 GALCP54803 685 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 PRKCEQ02156 737 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 CNTN2Q02246 1040 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 KIF22Q14807 665 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 SLC39A4Q6P5W5 647 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 KIFAP3Q92845 792 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 HVCN1Q96D96 273 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 SAAL1Q96ER3 474 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 TMEM117Q9H0C3 514 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 UBE2TQ9NPD8 197 aaPredicted RBP22.01■■□□□ 1.11
CLN3-230ENST00000568076 EXOC7Q9UPT5 735 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 ARID2Q68CP9 1835 aa22.01■■□□□ 1.11
CLN3-230ENST00000568076 SNRNP35Q16560 246 aaKnown RBP22■■□□□ 1.11
CLN3-230ENST00000568076 DICER1Q9UPY3 1922 aaKnown RBP22■■□□□ 1.11
CLN3-230ENST00000568076 KIF4AO95239 1232 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms