RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 INO80B-WBP1J3KQ70 363 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 GAS2O43903 313 aaKnown RBP15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 FGF18O76093 207 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 LYPLA2O95372 231 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 SPATA31C1P0DKV0 1188 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 ATF7P17544 494 aaPredicted RBP15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 CCT6AP40227 531 aaKnown RBP15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 PHKA2P46019 1235 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 TOB1P50616 345 aaPredicted RBP15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 CAMK1Q14012 370 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 CLUL1Q15846 466 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 SRGAP1Q7Z6B7 1085 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 ADGRD2Q7Z7M1 963 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 RBM23Q86U06 439 aaKnown RBP15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 LRRC43Q8N309 656 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 TUFT1Q9NNX1 390 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 GPRC5CQ9NQ84 441 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 CHST12Q9NRB3 414 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 FAM105AQ9NUU6 356 aa15.16■□□□□ 0.02
VPS9D1-204ENST00000565023 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 MEIS3P2A8K0S8 358 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 NT5C1B-RDH14C9J2C7 533 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 LINC01565O15544 149 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 DGAT1O75907 488 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 ERLIN2O94905 339 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 LAG3P18627 525 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 U2AF2P26368 475 aaKnown RBP eCLIP15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 CA8P35219 290 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 TRAPPC10P48553 1259 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 HYAL1Q12794 435 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 PTGDRQ13258 359 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 ORC2Q13416 577 aaPredicted RBP15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 FAM43BQ6ZT52 329 aaPredicted RBP15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 ZNF598Q86UK7 904 aaKnown RBP15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 CPB2Q96IY4 423 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 GBP3Q9H0R5 595 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 AGPAT5Q9NUQ2 364 aa15.15■□□□□ 0.02
VPS9D1-204ENST00000565023 ARHGEF35A5YM69 484 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 LRRIQ4A6NIV6 560 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 ASAP2O43150 1006 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 EOMESO95936 686 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 IL9P15248 144 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 GLRA2P23416 452 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 CAPSQ13938 189 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 TFDP1Q14186 410 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 NAALADL2Q58DX5 795 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 PLPP4Q5VZY2 271 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 LARP1BQ659C4 914 aaKnown RBP15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 KCNT2Q6UVM3 1135 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 HSCBQ8IWL3 235 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 C4orf32Q8N8J7 132 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 PABPC5Q96DU9 382 aaKnown RBP15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 ZNF558Q96NG5 402 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 NACC1Q96RE7 527 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 POLR3CQ9BUI4 534 aaPredicted RBP15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 POLD4Q9HCU8 107 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 LRWD1Q9UFC0 647 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 PCDHB2Q9Y5E7 798 aa15.14■□□□□ 0.01
VPS9D1-204ENST00000565023 PP2D1A8MPX8 630 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 PER2O15055 1255 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 ZC3H11AO75152 810 aaKnown RBP eCLIP15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 SKIP12755 728 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 LIG1P18858 919 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 ARL2P36404 184 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 NRIP1P48552 1158 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 PTENP60484 403 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 ERVFC1P60507 584 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 MXD4Q14582 209 aaPredicted RBP15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 ZRSR1Q15695 479 aaKnown RBP15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 ECM1Q16610 540 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 HAUS3Q68CZ6 603 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 PTCRAQ6ISU1 281 aaPredicted RBP15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 GLB1LQ6UWU2 654 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 CDR2LQ86X02 465 aaPredicted RBP15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 SNX29Q8TEQ0 813 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 PPP2R3CQ969Q6 453 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 APOL6Q9BWW8 343 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 TLR9Q9NR96 1032 aa15.13■□□□□ 0.01
VPS9D1-204ENST00000565023 TSPAN1O60635 241 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 RPA1P27694 616 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 CDC25AP30304 524 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 NDUFV1P49821 464 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 FXR2P51116 673 aaKnown RBP eCLIP15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 RAB27AP51159 221 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 RNASELQ05823 741 aaKnown RBP15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 DLX2Q07687 328 aaPredicted RBP15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 LEXMQ3ZCV2 418 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 UBXN11Q5T124 520 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 PADI6Q6TGC4 694 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 MRPS27Q92552 414 aaKnown RBP15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 PGBD4Q96DM1 585 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 EIF2AQ9BY44 585 aaKnown RBP15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 MRPL9Q9BYD2 267 aaKnown RBP15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 ENTPD7Q9NQZ7 604 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 KIAA1024Q9UPX6 916 aa15.12■□□□□ 0.01
VPS9D1-204ENST00000565023 B4GALT5O43286 388 aa15.11■□□□□ 0.01
VPS9D1-204ENST00000565023 OFD1O75665 1012 aa15.11■□□□□ 0.01
VPS9D1-204ENST00000565023 XRCC6P12956 609 aaKnown RBP eCLIP15.11■□□□□ 0.01
VPS9D1-204ENST00000565023 PDCP20941 246 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms