RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 KIF20AO95235 890 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 NMT1P30419 496 aaKnown RBP22.73■■□□□ 1.23
CLN3-212ENST00000564574 PCBP1Q15365 356 aaKnown RBP eCLIP22.73■■□□□ 1.23
CLN3-212ENST00000564574 HAUS6Q7Z4H7 955 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 TMEM161BQ8NDZ6 487 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 NOC4LQ9BVI4 516 aaKnown RBP22.73■■□□□ 1.23
CLN3-212ENST00000564574 IFT122Q9HBG6 1241 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 TMEM39AQ9NV64 488 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 TBC1D7Q9P0N9 293 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 TBX21Q9UL17 535 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 SQORQ9Y6N5 450 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 UBE4BO95155 1302 aa22.73■■□□□ 1.23
CLN3-212ENST00000564574 GCNT3O95395 438 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 SELPP16109 830 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 PPP1R2P41236 205 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 GTF2BQ00403 316 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 STK4Q13043 487 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 COBLL1Q53SF7 1204 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 ZNF618Q5T7W0 954 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 SASS6Q6UVJ0 657 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 PPP1R16BQ96T49 567 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 OSMRQ99650 979 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 HIPK3Q9H422 1215 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 SLC39A2Q9NP94 309 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 ADGRA3Q8IWK6 1321 aa22.72■■□□□ 1.23
CLN3-212ENST00000564574 PPP1R37O75864 691 aa22.71■■□□□ 1.23
CLN3-212ENST00000564574 PARNO95453 639 aaKnown RBP22.71■■□□□ 1.23
CLN3-212ENST00000564574 CHRNA1P02708 482 aa22.71■■□□□ 1.23
CLN3-212ENST00000564574 CTSHP09668 335 aa22.71■■□□□ 1.23
CLN3-212ENST00000564574 DARSP14868 501 aaKnown RBP22.71■■□□□ 1.23
CLN3-212ENST00000564574 LRRC8DQ7L1W4 858 aa22.71■■□□□ 1.23
CLN3-212ENST00000564574 EPM2AIP1Q7L775 607 aaPredicted RBP22.71■■□□□ 1.23
CLN3-212ENST00000564574 KIAA0895Q8NCT3 520 aa22.71■■□□□ 1.23
CLN3-212ENST00000564574 HPS3Q969F9 1004 aa22.71■■□□□ 1.23
CLN3-212ENST00000564574 ZNF668Q96K58 619 aaPredicted RBP22.71■■□□□ 1.23
CLN3-212ENST00000564574 KIFC3Q9BVG8 833 aa22.71■■□□□ 1.23
CLN3-212ENST00000564574 STRA6Q9BX79 667 aa22.71■■□□□ 1.23
CLN3-212ENST00000564574 PRMT7Q9NVM4 692 aaPredicted RBP22.71■■□□□ 1.23
CLN3-212ENST00000564574 GINS2Q9Y248 185 aa22.71■■□□□ 1.23
CLN3-212ENST00000564574 DENND3A2RUS2 1198 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 K7ERI5 159 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 BIN1O00499 593 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 KIAA0355O15063 1070 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 EIF4BP23588 611 aaKnown RBP22.7■■□□□ 1.22
CLN3-212ENST00000564574 NLRP12P59046 1061 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 MBTD1Q05BQ5 628 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 BMT2Q1RMZ1 405 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 PRPF38BQ5VTL8 546 aaKnown RBP22.7■■□□□ 1.22
CLN3-212ENST00000564574 TRAF7Q6Q0C0 670 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 USP38Q8NB14 1042 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 ZNF507Q8TCN5 953 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 PRIMPOLQ96LW4 560 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 CCDC113Q9H0I3 377 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 CDHR5Q9HBB8 845 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 GDAQ9Y2T3 454 aa22.7■■□□□ 1.22
CLN3-212ENST00000564574 INO80B-WBP1J3KQ70 363 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 MYBP10242 640 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 SFPQP23246 707 aaKnown RBP eCLIP22.69■■□□□ 1.22
CLN3-212ENST00000564574 STRN3Q13033 797 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 STIM1Q13586 685 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 MAPK6Q16659 721 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 FAM187BQ17R55 369 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 ZSCAN23Q3MJ62 389 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 L1TD1Q5T7N2 865 aaKnown RBP22.69■■□□□ 1.22
CLN3-212ENST00000564574 PPP4R3CPQ6ZMV5 832 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 FAM43BQ6ZT52 329 aaPredicted RBP22.69■■□□□ 1.22
CLN3-212ENST00000564574 MYOCDQ8IZQ8 938 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 GUF1Q8N442 669 aaKnown RBP22.69■■□□□ 1.22
CLN3-212ENST00000564574 FGFBP2Q9BYJ0 223 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 FZD8Q9H461 694 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 TMEM206Q9H813 350 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 TBX20Q9UMR3 447 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 EXOC7Q9UPT5 735 aa22.69■■□□□ 1.22
CLN3-212ENST00000564574 CASP5P51878 434 aa22.68■■□□□ 1.22
CLN3-212ENST00000564574 ZC2HC1CQ53FD0 456 aaPredicted RBP22.68■■□□□ 1.22
CLN3-212ENST00000564574 FBXO47Q5MNV8 452 aa22.68■■□□□ 1.22
CLN3-212ENST00000564574 ISM2Q6H9L7 571 aa22.68■■□□□ 1.22
CLN3-212ENST00000564574 MAP4K3Q8IVH8 894 aa22.68■■□□□ 1.22
CLN3-212ENST00000564574 MLKLQ8NB16 471 aa22.68■■□□□ 1.22
CLN3-212ENST00000564574 ACCSQ96QU6 501 aa22.68■■□□□ 1.22
CLN3-212ENST00000564574 DACH1Q9UI36 760 aa22.68■■□□□ 1.22
CLN3-212ENST00000564574 SYCE3A1L190 88 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 ACKR2O00590 384 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 RPS6KA5O75582 802 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 SLC34A2O95436 690 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 PRKCBP05771 671 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 IQCF3P0C7M6 154 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 BMP6P22004 513 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 STX1AQ16623 288 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 TSHZ1Q6ZSZ6 1077 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 TAS1R3Q7RTX0 852 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 GLIS3Q8NEA6 775 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 SCFD1Q8WVM8 642 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 TMEM40Q8WWA1 233 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 PPP1R12CQ9BZL4 782 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 MINDY3Q9H8M7 445 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 PRDM5Q9NQX1 630 aaPredicted RBP22.67■■□□□ 1.22
CLN3-212ENST00000564574 ANO10Q9NW15 660 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 PRKAG2Q9UGJ0 569 aa22.67■■□□□ 1.22
CLN3-212ENST00000564574 ERLIN2O94905 339 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms