RNA–Protein interactions for RNA: ENST00000564288.5

MACF1-231, Transcript of microtubule-actin crosslinking factor 1, human

APPRIS ALT2 TSL 5 BASIC

Gene MACF1, Length 24,828 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-231	ENST00000564288	HNRNPH3	P31942	346 aa	Known RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	HDLBP	Q00341	1268 aa	Known RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	BFSP1	Q12934	665 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	DNAJC3	Q13217	504 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	LSAMP	Q13449	338 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	METTL24	Q5JXM2	366 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	SUGCT	Q9HAC7	445 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	SLC38A10	Q9HBR0	1119 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	C6orf203	Q9P0P8	240 aa	Predicted RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	ABCA6	Q8N139	1617 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	EXOC3L4	Q17RC7	722 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	MICU3	Q86XE3	530 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	TTC13	Q8NBP0	860 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	RIN2	Q8WYP3	895 aa	Predicted RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	BRD8	Q9H0E9	1235 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	RTCB	Q9Y3I0	505 aa	Known RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	RBM5	P52756	815 aa	Known RBP eCLIP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	CSRNP1	Q96S65	589 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	ZNF184	Q99676	751 aa	Predicted RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	THTPA	Q9BU02	230 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	PPARGC1A	Q9UBK2	798 aa	Known RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	LETM2	Q2VYF4	491 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	SERPINA10	Q9UK55	444 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	DBR1	Q9UK59	544 aa	Known RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	MPP4	Q96JB8	637 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	FAM124B	Q9H5Z6	455 aa	Predicted RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	INHBA	P08476	426 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	HSPD1	P10809	573 aa	Known RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	C2orf54	Q08AI8	447 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	STK4	Q13043	487 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	CDHR1	Q96JP9	859 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	CLIC6	Q96NY7	704 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	ERGIC2	Q96RQ1	377 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	MRPL47	Q9HD33	250 aa	Known RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	LMTK3	Q96Q04	1460 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	CENPX	A8MT69	81 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	FAM89A	Q96GI7	184 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	TTC7A	Q9ULT0	858 aa	Predicted RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	TECPR2	O15040	1411 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	NEDD4	P46934	1319 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	SETD1B	Q9UPS6	1966 aa	Known RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	GUCY1B2	O75343	617 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	KCNA2	P16389	499 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	GUF1	Q8N442	669 aa	Known RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	EAF2	Q96CJ1	260 aa	Predicted RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	NUDT16	Q96DE0	195 aa	Known RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	CTNND2	Q9UQB3	1225 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	MOCS3	O95396	460 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	BLOC1S6	Q9UL45	172 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	SPAG6	O75602	509 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	HSPA1L	P34931	641 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	SHC4	Q6S5L8	630 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	LRMDA	Q9H2I8	198 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	AP3B1	O00203	1094 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	WWP1	Q9H0M0	922 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	SLC5A4	Q9NY91	659 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	NAALADL1	Q9UQQ1	740 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	SLIT1	O75093	1534 aa		4.53	□□□□□ -1.68
MACF1-231	ENST00000564288	FAM58BP	P0C7Q3	252 aa		4.53	□□□□□ -1.69
MACF1-231	ENST00000564288	SLC18A1	P54219	525 aa		4.53	□□□□□ -1.69
MACF1-231	ENST00000564288	YWHAE	P62258	255 aa	Known RBP	4.53	□□□□□ -1.69
MACF1-231	ENST00000564288	PI16	Q6UXB8	463 aa		4.53	□□□□□ -1.69
MACF1-231	ENST00000564288	AGAP3	Q96P47	875 aa		4.53	□□□□□ -1.69
MACF1-231	ENST00000564288	RNF26	Q9BY78	433 aa	Predicted RBP	4.53	□□□□□ -1.69
MACF1-231	ENST00000564288	PIH1D3	Q9NQM4	214 aa	Known RBP	4.53	□□□□□ -1.69
MACF1-231	ENST00000564288	SYNPO2	Q9UMS6	1093 aa		4.53	□□□□□ -1.69
MACF1-231	ENST00000564288	SPEF1	Q9Y4P9	236 aa		4.53	□□□□□ -1.69
MACF1-231	ENST00000564288	SMNDC1	O75940	238 aa	Known RBP eCLIP	4.52	□□□□□ -1.69	1e-7	■■■□□ 15.1
MACF1-231	ENST00000564288	USP4	Q13107	963 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	UBE3C	Q15386	1083 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	ZC3H12A	Q5D1E8	599 aa	Known RBP	4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	SLC26A7	Q8TE54	656 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	STK33	Q9BYT3	514 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	PTPRU	Q92729	1446 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	UNC5C	O95185	931 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	MYL4	P12829	197 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	TIMM10	P62072	90 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	CEP55	Q53EZ4	464 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	KIFC2	Q96AC6	838 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	CEP72	Q9P209	647 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	DMGDH	Q9UI17	866 aa	Known RBP	4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	MADD	Q8WXG6	1647 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	DDAH1	O94760	285 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	STX1B	P61266	288 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	GRAMD1B	Q3KR37	738 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	PPP1R15B	Q5SWA1	713 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	CDC42BPG	Q6DT37	1551 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	RNF103-CHMP3	A0A140T963	221 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	TRIM60	Q495X7	471 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	AASDH	Q4L235	1098 aa	Predicted RBP	4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	SPDYA	Q5MJ70	313 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	KRT28	Q7Z3Y7	464 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	RSAD2	Q8WXG1	361 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	OTUD5	Q96G74	571 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	AIPL1	Q9NZN9	384 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	WHRN	Q9P202	907 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	RAB27A	P51159	221 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	FAM83B	Q5T0W9	1011 aa		4.52	□□□□□ -1.69
MACF1-231	ENST00000564288	MINDY2	Q8NBR6	621 aa		4.52	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 30 ms