RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	USH1G	Q495M9	461 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	FAM160B2	Q86V87	743 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	BLID	Q8IZY5	108 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	ZNF713	Q8N859	430 aa	Predicted RBP	11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	RASGRP4	Q8TDF6	673 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	MAGOHB	Q96A72	148 aa	Known RBP	11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	RPAP3	Q9H6T3	665 aa	Predicted RBP	11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	PCDHA4	Q9UN74	947 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	RLF	Q13129	1914 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	ENO4	A6NNW6	628 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	C19orf81	C9J6K1	198 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	DIAPH2	O60879	1101 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	FLOT1	O75955	427 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	RTN3	O95197	1032 aa	Predicted RBP	11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	NAB2	Q15742	525 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	CCDC174	Q6PII3	467 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	HOOK3	Q86VS8	718 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	GBP7	Q8N8V2	638 aa	Predicted RBP	11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	SCFD2	Q8WU76	684 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	ZMYND12	Q9H0C1	365 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	C6orf50	Q9HD87	102 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	DISC1	Q9NRI5	854 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	PANK4	Q9NVE7	773 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	TMOD4	Q9NZQ9	345 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	SAMD15	Q9P1V8	674 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	FBXL5	Q9UKA1	691 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	L3MBTL1	Q9Y468	752 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	PCDHA1	Q9Y5I3	950 aa		11.98	□□□□□ -0.49
TCF4-222	ENST00000564228	WNT7A	O00755	349 aa		11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	TAL1	P17542	331 aa	Predicted RBP	11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	PAPOLA	P51003	745 aa	Known RBP	11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	PIK3AP1	Q6ZUJ8	805 aa		11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	TBC1D1	Q86TI0	1168 aa	Predicted RBP	11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	FBXO11	Q86XK2	927 aa		11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	ERO1B	Q86YB8	467 aa		11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	OR2W6P	Q8NHA6	318 aa		11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	SYN2	Q92777	582 aa	Predicted RBP	11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	PBK	Q96KB5	322 aa		11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	AMN	Q9BXJ7	453 aa		11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	CUEDC2	Q9H467	287 aa		11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	LOC285556	D6RIA3	1793 aa		11.97	□□□□□ -0.49
TCF4-222	ENST00000564228	BTNL10	A8MVZ5	291 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228		F8VZ95	297 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	CCDC188	H7C350	402 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	PALM	O75781	387 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	CELF2	O95319	508 aa	Known RBP	11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	NPTXR	O95502	500 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	VIM	P08670	466 aa	Known RBP	11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	GNA11	P29992	359 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	ADCY7	P51828	1080 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	NCALD	P61601	193 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	PPAT	Q06203	517 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	IL17A	Q16552	155 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	KRT71	Q3SY84	523 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	PDXDC1	Q6P996	788 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	FAM43B	Q6ZT52	329 aa	Predicted RBP	11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	TMC3	Q7Z5M5	1100 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	CROCCP2	Q86T23	111 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	RBM46	Q8TBY0	533 aa	Known RBP	11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	UBLCP1	Q8WVY7	318 aa	Predicted RBP	11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	ATXN2L	Q8WWM7	1075 aa	Known RBP	11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	SEC14L1	Q92503	715 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	IFT74	Q96LB3	600 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	YIPF3	Q9GZM5	350 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	KBTBD4	Q9NVX7	518 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	SH3BP1	Q9Y3L3	701 aa		11.96	□□□□□ -0.49
TCF4-222	ENST00000564228	SPDYE5	A6NIY4	337 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228		E7ENQ6	273 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	SART1	O43290	800 aa	Known RBP	11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	PLA2G6	O60733	806 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	ATP2A2	P16615	1042 aa	Known RBP	11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	ATP4A	P20648	1035 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	ALDH5A1	P51649	535 aa	Predicted RBP	11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	LBR	Q14739	615 aa	Known RBP	11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	TRADD	Q15628	312 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	GALNTL6	Q49A17	601 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	VWA3B	Q502W6	1294 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	ANKRD20A2	Q5SQ80	823 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	ANKRD20A1	Q5TYW2	823 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	ANKRD20A3	Q5VUR7	823 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	GALNT17	Q6IS24	598 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	CHADL	Q6NUI6	762 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	DAGLB	Q8NCG7	672 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	ACTRT1	Q8TDG2	376 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	BAP1	Q92560	729 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	TAF4B	Q92750	862 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	OPTN	Q96CV9	577 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	C12orf42	Q96LP6	360 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	TSC22D3	Q99576	134 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	PLCD4	Q9BRC7	762 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	OSBPL1A	Q9BXW6	950 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	SLITRK6	Q9H5Y7	841 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	GBA2	Q9HCG7	927 aa	Predicted RBP	11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	BIN2	Q9UBW5	565 aa	Predicted RBP	11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	PCDHA6	Q9UN73	950 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	PCDHA8	Q9Y5H6	950 aa		11.96	□□□□□ -0.5
TCF4-222	ENST00000564228	CCDC194	A0A1B0GVG4	234 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	ESYT2	A0FGR8	921 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	LRRC53	A6NM62	1247 aa		11.95	□□□□□ -0.5
TCF4-222	ENST00000564228	BACH1	O14867	736 aa		11.95	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms