RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 ZNF513Q8N8E2 541 aaPredicted RBP6.54□□□□□ -1.36
VPS35-204ENST00000563884 PARK7Q99497 189 aaKnown RBP6.54□□□□□ -1.36
VPS35-204ENST00000563884 PCDHB10Q9UN67 800 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 FZD1Q9UP38 647 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 PMF1-BGLAPU3KQ54 211 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 PTPRFP10586 1907 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 RLFQ13129 1914 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 BTBD19C9JJ37 291 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 L1CAMP32004 1257 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 CORO7P57737 925 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 PPP2R5DQ14738 602 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 STRIP1Q5VSL9 837 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 SLC43A3Q8NBI5 491 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 IL17REQ8NFR9 667 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 RCC1LQ96I51 464 aaKnown RBP6.53□□□□□ -1.36
VPS35-204ENST00000563884 BDH2Q9BUT1 245 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 CAPN10Q9HC96 672 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 CPA4Q9UI42 421 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 PLA2G2DQ9UNK4 145 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 MED23Q9ULK4 1368 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 DNAH12Q6ZR08 3092 aa6.53□□□□□ -1.36
VPS35-204ENST00000563884 XDHP47989 1333 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 GBF1Q92538 1859 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 TNPO2O14787 897 aaKnown RBP6.52□□□□□ -1.37
VPS35-204ENST00000563884 HMGCRP04035 888 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 EPHX1P07099 455 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 FGRP09769 529 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 HSP90B1P14625 803 aaKnown RBP6.52□□□□□ -1.37
VPS35-204ENST00000563884 ATF2P15336 505 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 RBM25P49756 843 aaKnown RBP6.52□□□□□ -1.37
VPS35-204ENST00000563884 FLT3LGP49771 235 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 PLP2Q04941 152 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 PPIL2Q13356 520 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 DACT2Q5SW24 774 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 HEATR6Q6AI08 1181 aaKnown RBP6.52□□□□□ -1.37
VPS35-204ENST00000563884 TTLL7Q6ZT98 887 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 ANKRD23Q86SG2 305 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 MORC1Q86VD1 984 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 ERO1BQ86YB8 467 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 ADGRG2Q8IZP9 1017 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 ARHGEF39Q8N4T4 335 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 ZBTB38Q8NAP3 1195 aaPredicted RBP6.52□□□□□ -1.37
VPS35-204ENST00000563884 PPM1EQ8WY54 764 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 COA7Q96BR5 231 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 EPHX3Q9H6B9 360 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 USP40Q9NVE5 1235 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 TRMT112Q9UI30 125 aaKnown RBP6.52□□□□□ -1.37
VPS35-204ENST00000563884 ZNF318Q5VUA4 2279 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 DLG5Q8TDM6 1919 aa6.52□□□□□ -1.37
VPS35-204ENST00000563884 KCNQ3O43525 872 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 PLA2G1BP04054 148 aaKnown RBP6.51□□□□□ -1.37
VPS35-204ENST00000563884 CTGFP29279 349 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 RPS8P62241 208 aaKnown RBP6.51□□□□□ -1.37
VPS35-204ENST00000563884 GNL2Q13823 731 aaKnown RBP6.51□□□□□ -1.37
VPS35-204ENST00000563884 VGLL4Q14135 290 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 SF3B3Q15393 1217 aaKnown RBP6.51□□□□□ -1.37
VPS35-204ENST00000563884 PPP2R5EQ16537 467 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 CABP7Q86V35 215 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 ADCY4Q8NFM4 1077 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 FNIP1Q8TF40 1166 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 RTF1Q92541 710 aaKnown RBP6.51□□□□□ -1.37
VPS35-204ENST00000563884 ALG3Q92685 438 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 CELF1Q92879 486 aaKnown RBP6.51□□□□□ -1.37
VPS35-204ENST00000563884 ANAPC16Q96DE5 110 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 HOOK2Q96ED9 719 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 ZBED3Q96IU2 234 aaPredicted RBP6.51□□□□□ -1.37
VPS35-204ENST00000563884 RNF38Q9H0F5 515 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 GBP3Q9H0R5 595 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 VEZTQ9HBM0 779 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 OGDHLQ9ULD0 1010 aa6.51□□□□□ -1.37
VPS35-204ENST00000563884 RRP7AQ9Y3A4 280 aaKnown RBP6.51□□□□□ -1.37
VPS35-204ENST00000563884 COL3A1P02461 1466 aaPredicted RBP6.51□□□□□ -1.37
VPS35-204ENST00000563884 PFASO15067 1338 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 CFAP54Q96N23 3096 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 A0A1B0GTL3 188 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 PDHXO00330 501 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 ADRB1P08588 477 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 NCAM1P13591 858 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 MYL6BP14649 208 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 ITGB8P26012 769 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 MC3RP41968 323 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 ZNF143P52747 638 aaPredicted RBP6.5□□□□□ -1.37
VPS35-204ENST00000563884 RTP5Q14D33 572 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 NCAPHQ15003 741 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 SHHQ15465 462 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 VWA3BQ502W6 1294 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 KIAA1211LQ6NV74 962 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 VHLLQ6RSH7 139 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 SPATA25Q9BR10 227 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 RXFP1Q9HBX9 757 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 PRKAG3Q9UGI9 489 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 GABRQQ9UN88 632 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 A0A0G2JMZ2 1700 aa6.5□□□□□ -1.37
VPS35-204ENST00000563884 PLXNB2O15031 1838 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 ANKRD34BA5PLL1 514 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 E9PSI1 815 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 SMAD7O15105 426 aaKnown RBP6.49□□□□□ -1.37
VPS35-204ENST00000563884 PRICKLE3O43900 615 aaPredicted RBP6.49□□□□□ -1.37
VPS35-204ENST00000563884 DIAPH1O60610 1272 aaKnown RBP6.49□□□□□ -1.37
VPS35-204ENST00000563884 PPM1BO75688 479 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms