RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TCF25Q9BQ70 676 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 AGPAT5Q9NUQ2 364 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 FAM105AQ9NUU6 356 aa19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 BARX2Q9UMQ3 279 aaPredicted RBP19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 PIN4Q9Y237 131 aaKnown RBP19.25■□□□□ 0.67
VPS9D1-203ENST00000563798 FAM86C2PA6NEL3 165 aa19.24■□□□□ 0.67
VPS9D1-203ENST00000563798 CBX2Q14781 532 aaPredicted RBP19.24■□□□□ 0.67
VPS9D1-203ENST00000563798 HERC4Q5GLZ8 1057 aaPredicted RBP19.24■□□□□ 0.67
VPS9D1-203ENST00000563798 NCAPH2Q6IBW4 605 aa19.24■□□□□ 0.67
VPS9D1-203ENST00000563798 CATSPER4Q7RTX7 472 aa19.24■□□□□ 0.67
VPS9D1-203ENST00000563798 MRPL10Q7Z7H8 261 aaKnown RBP19.24■□□□□ 0.67
VPS9D1-203ENST00000563798 DYDC2Q96IM9 177 aa19.24■□□□□ 0.67
VPS9D1-203ENST00000563798 PCDHA12Q9UN75 941 aa19.24■□□□□ 0.67
VPS9D1-203ENST00000563798 HCN4Q9Y3Q4 1203 aa19.24■□□□□ 0.67
VPS9D1-203ENST00000563798 USP15Q9Y4E8 981 aaPredicted RBP19.24■□□□□ 0.67
VPS9D1-203ENST00000563798 HIDE1A8MVS5 230 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 BTBD18B2RXH4 712 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 LOC730098B7Z3J9 87 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 PLA2G5P39877 138 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 PBX3P40426 434 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 ALDH7A1P49419 539 aaKnown RBP19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 BCAR1P56945 870 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 LAMTOR4Q0VGL1 99 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 EMC2Q15006 297 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 PCBP1Q15365 356 aaKnown RBP eCLIP19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 FERMT3Q86UX7 667 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 DIS3L2Q8IYB7 885 aaKnown RBP19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 MRPL43Q8N983 215 aaKnown RBP19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 TMEM143Q96AN5 459 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 MTMR9Q96QG7 549 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 S1PR5Q9H228 398 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 ENTPD7Q9NQZ7 604 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 C5orf42Q9H799 3197 aa19.23■□□□□ 0.67
VPS9D1-203ENST00000563798 JAK2O60674 1132 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 OFD1O75665 1012 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 SRGAP2BP0DMP2 458 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 HOXA11P31270 313 aaPredicted RBP19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 RBM10P98175 930 aaKnown RBP19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 POU5F1BQ06416 359 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 ST3GAL1Q11201 340 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 CTTNQ14247 550 aaKnown RBP19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 SMC1AQ14683 1233 aaKnown RBP19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 CALCRLQ16602 461 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 XKR9Q5GH70 373 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 NOMO2Q5JPE7 1267 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 PLPP4Q5VZY2 271 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 ANKRD54Q6NXT1 300 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 GLB1LQ6UWU2 654 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 TMC7Q7Z402 723 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 IFNLR1Q8IU57 520 aaPredicted RBP19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 RNF135Q8IUD6 432 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 PGBD4Q96DM1 585 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 EIF2AK1Q9BQI3 630 aaKnown RBP19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 PHF7Q9BWX1 381 aaPredicted RBP19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 MINDY3Q9H8M7 445 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 ANKEF1Q9NU02 776 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 IRAK3Q9Y616 596 aa19.22■□□□□ 0.67
VPS9D1-203ENST00000563798 ZBTB39O15060 712 aa19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 SEC24BO95487 1268 aa19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 XRCC6P12956 609 aaKnown RBP eCLIP19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 HOXB8P17481 243 aaPredicted RBP19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 CYP4A11Q02928 519 aa19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 TRIM29Q14134 588 aa19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 MXD4Q14582 209 aaPredicted RBP19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 TPH2Q8IWU9 490 aa19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 LPPQ93052 612 aa19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 TTC12Q9H892 705 aaPredicted RBP19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 XPNPEP1Q9NQW7 623 aa19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 TBC1D13Q9NVG8 400 aa19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 PCDHB2Q9Y5E7 798 aa19.21■□□□□ 0.67
VPS9D1-203ENST00000563798 C2orf71A6NGG8 1288 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 MEIS3P2A8K0S8 358 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 NEMFO60524 1076 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 GALTP07902 379 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 SRGAP2CP0DJJ0 459 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 UBXN11Q5T124 520 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 SYCE2Q6PIF2 218 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 AGMOQ6ZNB7 445 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 DDX53Q86TM3 631 aaKnown RBP19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 RNF149Q8NC42 400 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 TMEM169Q96HH4 297 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 IGSF21Q96ID5 467 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 MTRQ99707 1265 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 NRDE2Q9H7Z3 1164 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 CNTNAP2Q9UHC6 1331 aa19.2■□□□□ 0.66
VPS9D1-203ENST00000563798 WNT7AO00755 349 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 DGAT1O75907 488 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 AXLP30530 894 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 PTENP60484 403 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 BMS1Q14692 1282 aaKnown RBP19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 CNNM3Q8NE01 707 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 CASP10Q92851 521 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 FAM122AQ96E09 287 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 CCDC51Q96ER9 411 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 LLPHQ9BRT6 129 aaKnown RBP19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 NFKBIZQ9BYH8 718 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 ZBP1Q9H171 429 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 KANSL3Q9P2N6 904 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 STK39Q9UEW8 545 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 MUTYHQ9UIF7 546 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms